Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02634 ATGATGAATTCCATGTCCTACACTTTTTCTTGGGAACCATTTTGCGCCCCTCTTGATGAAAATGAGGTAAGATTCTATCAATCTTTTGAACAAGGGAATGTGGGGGATTTTGTTCGCATTAAGGTACGTGTTAAACATGAACTATGCATCACTCCCCAACAACACCCTTCTTTAATTTTACCTTTTGATCGGTTTTTATATGAACAAACCATGTTTGTACCTTACCAAGATTTTCTACAACATGCTTCGATATATATGCAAGTTCACTTTCCTAATGTCATCATCCCCCATGAGTTGACGTACACAATGCTGCCATTTTTAATGACATATGTAAGGGATGCACGAACTTCACCTTCCGGATTTTACTATGAAAGTCCTCGAATTCGTGTTTTTCCTCTAGGTTTGAATGTTTTTGTTCGAATGTTATTTGGTCATTGCGAGAATGTTTTCATCAATAACCTAGCTGCGAGGTTTGATTCCATTGGAGAGGTGCAATTTGTTCCGGCATCAAAGGAAGCCATTGAATCTCTTGAGAAGGTGAAGATTGAAAACCCTAATGCCATTGAAAATTGTAGTGTCTGTCAGTTTGAGTTCAATGCTGGAATGGAGGTCACAAAAATGCCTTGTAATCATCTGTATCATCAAGAATGTATTATTCAGTGGCTGAAAACGAGTCACATGTGCCCAATGTGTCGCTATCCAATGCCAACTTCAACCAGTGGCTGA 726 0.3898 MMNSMSYTFSWEPFCAPLDENEVRFYQSFEQGNVGDFVRIKVRVKHELCITPQQHPSLILPFDRFLYEQTMFVPYQDFLQHASIYMQVHFPNVIIPHELTYTMLPFLMTYVRDARTSPSGFYYESPRIRVFPLGLNVFVRMLFGHCENVFINNLAARFDSIGEVQFVPASKEAIESLEKVKIENPNAIENCSVCQFEFNAGMEVTKMPCNHLYHQECIIQWLKTSHMCPMCRYPMPTSTSG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02634 241 CDD RING-H2_PA-TM-RING 191 232 - -
Vifa2g02634 241 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Vifa2g02634 241 SMART ring_2 191 231 IPR001841 -
Vifa2g02634 241 Pfam Ring finger domain 190 232 IPR001841 -
Vifa2g02634 241 SUPERFAMILY RING/U-box 174 238 - -
Vifa2g02634 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 238 IPR013083 -
Vifa2g02634 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02634 Vifa-Chr2 703982313 703983038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02634 156 236 C3H Transcription Factor Family AT1G18760 34.146 7.83e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02634 - - psat:127082836 443.736