Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g02633 | ATGAATTTTTCTTGGGAACCATTTTGCGCCCCTTTGAATGAAAACGAGGTAAGATTCTATGAATCTTTCGAACAAGGGAATGTGGGGGATTTTGTTCGCATTAAGGTACGTGTTAAACATGAACTATGCATCACTCCCCAACAACATCCTTCTTTAATTTTACCTTTTGATCGGTTTATACATGAGCGAATCATGCTTGTTCCTTACCAAGATTTTCTTCAACATGCTTTGATATACATGCAAGTTCACTTTCCTAATGTTATCATCCCCCATGAGTTGATGTACACAATGCTGCCGTTTTTAATGACATATGTAAGGGATGCACGAAGTTCACCTTCCGGATTTTACTATGAAAGTCCTCGAATTCGTGTTTTTCCTCTAGGTTTGAATGTTTTTGTTCGAATGTTATTTGGTCAGAGTAACAATGCTTCCATCAATAACATAATCGCCAGGTTAGATTCTATGGGAGAGGTGCAATTTGTTCCGGCATCAAAGGAAGCCATTGAGTCTCTTGAGAAGGTGAAGATCCAAAACTCTAATGCCATTGAAAAGTGTAGTGTCTGTCAATTTGAGTTCAATGCTGGAATGGAGGTCACAAAAATGCCTTGCAATCATTTGTATCATCAAGAATGCATTGTTCAGTGGCTGGAAACTAATCACATGTGCCCAATGTGCCGCTACGCAATGCCAACTTCAACCAGTGCCTGA | 708 | 0.3955 | MNFSWEPFCAPLNENEVRFYESFEQGNVGDFVRIKVRVKHELCITPQQHPSLILPFDRFIHERIMLVPYQDFLQHALIYMQVHFPNVIIPHELMYTMLPFLMTYVRDARSSPSGFYYESPRIRVFPLGLNVFVRMLFGQSNNASINNIIARLDSMGEVQFVPASKEAIESLEKVKIQNSNAIEKCSVCQFEFNAGMEVTKMPCNHLYHQECIVQWLETNHMCPMCRYAMPTSTSA | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g02633 | 235 | CDD | RING-H2_PA-TM-RING | 185 | 226 | - | - | |
| Vifa2g02633 | 235 | Pfam | Ring finger domain | 184 | 226 | IPR001841 | - | |
| Vifa2g02633 | 235 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 141 | 230 | - | - | |
| Vifa2g02633 | 235 | SUPERFAMILY | RING/U-box | 169 | 232 | - | - | |
| Vifa2g02633 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 226 | IPR001841 | - | |
| Vifa2g02633 | 235 | SMART | ring_2 | 185 | 225 | IPR001841 | - | |
| Vifa2g02633 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 232 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g02633 | Vifa-Chr2 | 703966723 | 703967430 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa2g02633 | 148 | 230 | C3H Transcription Factor Family | AT1G18760 | 36.905 | 1.17e-18 | 79.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g02633 | - | - | psat:127079703 | 414.075 |