Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02633 ATGAATTTTTCTTGGGAACCATTTTGCGCCCCTTTGAATGAAAACGAGGTAAGATTCTATGAATCTTTCGAACAAGGGAATGTGGGGGATTTTGTTCGCATTAAGGTACGTGTTAAACATGAACTATGCATCACTCCCCAACAACATCCTTCTTTAATTTTACCTTTTGATCGGTTTATACATGAGCGAATCATGCTTGTTCCTTACCAAGATTTTCTTCAACATGCTTTGATATACATGCAAGTTCACTTTCCTAATGTTATCATCCCCCATGAGTTGATGTACACAATGCTGCCGTTTTTAATGACATATGTAAGGGATGCACGAAGTTCACCTTCCGGATTTTACTATGAAAGTCCTCGAATTCGTGTTTTTCCTCTAGGTTTGAATGTTTTTGTTCGAATGTTATTTGGTCAGAGTAACAATGCTTCCATCAATAACATAATCGCCAGGTTAGATTCTATGGGAGAGGTGCAATTTGTTCCGGCATCAAAGGAAGCCATTGAGTCTCTTGAGAAGGTGAAGATCCAAAACTCTAATGCCATTGAAAAGTGTAGTGTCTGTCAATTTGAGTTCAATGCTGGAATGGAGGTCACAAAAATGCCTTGCAATCATTTGTATCATCAAGAATGCATTGTTCAGTGGCTGGAAACTAATCACATGTGCCCAATGTGCCGCTACGCAATGCCAACTTCAACCAGTGCCTGA 708 0.3955 MNFSWEPFCAPLNENEVRFYESFEQGNVGDFVRIKVRVKHELCITPQQHPSLILPFDRFIHERIMLVPYQDFLQHALIYMQVHFPNVIIPHELMYTMLPFLMTYVRDARSSPSGFYYESPRIRVFPLGLNVFVRMLFGQSNNASINNIIARLDSMGEVQFVPASKEAIESLEKVKIQNSNAIEKCSVCQFEFNAGMEVTKMPCNHLYHQECIVQWLETNHMCPMCRYAMPTSTSA 235
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02633 235 CDD RING-H2_PA-TM-RING 185 226 - -
Vifa2g02633 235 Pfam Ring finger domain 184 226 IPR001841 -
Vifa2g02633 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 141 230 - -
Vifa2g02633 235 SUPERFAMILY RING/U-box 169 232 - -
Vifa2g02633 235 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Vifa2g02633 235 SMART ring_2 185 225 IPR001841 -
Vifa2g02633 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 232 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa2g02633 Vifa-Chr2 703966723 703967430 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02633 148 230 C3H Transcription Factor Family AT1G18760 36.905 1.17e-18 79.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02633 - - psat:127079703 414.075