Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02625 ATGAATATCGATATCTCTAACTTCTTCAACAGGCTTTGCAACAAAATAGCAATTTTACTAATATACATCTTAGTAGAATTCATTATCCTCATTTGGAAACTAACATCAGGTTCAGAAACACAACCAATCACAACTCGGCGATACCTTAAATTCATCGAAGAAAAGAATCCAACAATTCGCTACACCAAAAAGTCCAACAATAAGCCATTATTACTAAACGTGGATTGTAGTGTGTGTTTATGCGATTTCGAAGAAGGAGAGAAAGTGAGAAGCTTGAAATGCAAACACGCGTTTCATAAGGATTGTTTGGATAAATGGTTGCAAGATTATTTGGCTACATGTCCGTTATGTAGGGAACAGGTTTTACCGGAACATGTTGTGTCGAAACATCGTATGCACCGAAATCATCAACAAGGTTATAATGTTGAAGGGAATCATGAGAATCTTCCTTATGTTTTGTTCTTGCTGCGTGGTGGTAGTACTAGTCATTTGCGTAGAAATGTCATTTGA 510 0.3647 MNIDISNFFNRLCNKIAILLIYILVEFIILIWKLTSGSETQPITTRRYLKFIEEKNPTIRYTKKSNNKPLLLNVDCSVCLCDFEEGEKVRSLKCKHAFHKDCLDKWLQDYLATCPLCREQVLPEHVVSKHRMHRNHQQGYNVEGNHENLPYVLFLLRGGSTSHLRRNVI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02625 169 SMART ring_2 76 117 IPR001841 -
Vifa2g02625 169 PANTHER - 5 163 - -
Vifa2g02625 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 123 IPR013083 -
Vifa2g02625 169 Pfam Ring finger domain 75 118 IPR001841 -
Vifa2g02625 169 ProSiteProfiles Zinc finger RING-type profile. 76 118 IPR001841 -
Vifa2g02625 169 FunFam Putative RING zinc finger domain superfamily protein 45 123 - -
Vifa2g02625 169 SUPERFAMILY RING/U-box 61 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02625 Vifa-Chr2 700012827 700013336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02625 35 122 C3H Transcription Factor Family AT2G27940 44.444 4.90e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02625 K16282 - gmx:102661897 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02625 2 700012827 700013336 Vifa2g02625 2 700012827 700013336 ECH
Vifa2g02625 2 700012827 700013336 Vifa2g02625 2 700012827 700013336 PCT