Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02617 ATGGCGACCGCGATGACTTGGAGATTTACTCCAAATAATGGCACCAGCCTTGCTGCTAATGAGGAAAGAAATGGGGATGGCAAGGCTCAAGATTCAGAGGCTCCAACTTCCCATTCTGTTCAGAAAATGGGATTGAGAGAACGTAGCAGCAGCGGCATGGAGGATGCAGATGGGACATTAGCAAGTATTGCTCAAAGCATTGAGCAGCTACGTCGGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCCTTGAAAAAATTATTGGAGCTTATTGATATGCGTGAAAATGCTTTTAGTGCAGTTGGATCTCACTCTCAGGCAGTTCCGGTGCTTGTTTCCCTTCTCCGGTCAGGTTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAGGAAAATGAGTTAAGGGTGAAAGTTTTGCTTGGAGGATGTATTCCTCCTTTGCTCAGTCTACTAAAGTCCAGTTCTGAAGAAGGTCAAGTAGCTGCTGCGAAGACAATTTTCGCTGTCTCCCAAGGTGATGCCAAAGATCATGTTGGATCAAAAATCTTTTCAACTGAAGGAGTTGTTCCAGTGCTCTGGGAACAGCTGCAAAAGGGCCTAAAGGGTGGAAGTGTAGTAGATAGTTTATTGACTGGAGCGTTGAAAAATCTCTATAGTGGTACTGAGAGATTCTGGAATGCAACAGTACAGTCTGGAGGAGTGGACATATTACTGAAGTTACTGACAACAGGACAGTCTAGCACTTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAAGATGCATCTTTTTGCTCAAAGCTATTGACAGCAGATGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGACGCCCCAGTTAGAGCTGAAGCAGCTGGTGCTATTAAATCTCTGTCTGCCCAGTGCCAAGATGCAAGGAAAGAGATAGCCAATTGTAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCAATACAGGAGAATGCTATGAGTGCTCTTGCAAACATCTCTGGTGGATTGTCTTACGTCATCTCCAGCCTAAGTAAAAGCCTTGAATCATGCTCCTCACCTACCCAAACTGCTGACACATTAGGGGCTTTAGCTTCAGCTCTTATGATATACGATGACAAGGCAGAATATACCAAAGCATCAGATCCTTTGGCAGTTGAGCAGACATTACTCGAGCAATTTAAACCCCGTTCTCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCTCTTGCTAGTTTGTATGGAAATCCTATACTATCACTTAAACTTGCAAATTCTGATGCAAAACGTTTACTTGTTGGTTTGATAACAATGGCGGCTAAAGAAGTGCAAGATGAGCTTCTAAAAGCACTCTTGACACTGTGCAATAGTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCAATTGATATCACTTCTGGGGCTTTCATCAGAACAGCAACAAGAATGTGCTGTTGCCCTGCTCTGTCTTTTGTCTGATGAAAATGTTGAAAGTAAGTGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGTCGGGATCTTCCAAAGCAAAGGAAGACTCGGCAACAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCCTGTGTTGAAAGCGCTGATGCAGTTCCTGCATTGCTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCTAAGACCTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTCACAGCATTATTGACTAGTGATCTACCTGAGTCCAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTTCTCTTAGTGACCTTCTACGTGATGGCAGTGCTGCGAGTGATGCGATCAATACAATGATAAAATTATTAAGCTCCACAAAGGAAGAAACTCAGGCAAAGTCAGCATCAGCCTTGTCGGGAATTTTTGAAACAAGGAAAGATGTGAGCGAAAGCAACATTGCTGTGAAAACTCTTTTGTCAGCCATGAAGTTGCTTAATGTTGAATCTAGAAGTATCTTAGTGGAGTCCTCACGTTGCCTAGCTGCAATATTTCTTTCCATTAAAGAGAATAGGGAGGTAGCTGCTAATGCTAGAGATGCATTATTCTCTCTAGTTGAACTAGCTAGCTCTTCAGTTTTGGAAGTAGCGGAGCTGGCAACATGTGCTGTGGCAAATCTTTTATTGGATAGTGAAATTGCAGAGAAAGTTATTGTGGAGGAAGTTATTTTTCCCGCTACCAGAGTATTGCGTGATGGCACAAGATCTGGAAAAATACATGCAGCAAGAGCAATTTCTCGCCTTTTGCATTCTAGGCAAGTTGATTATGCTGTAAATGATTGTGTGAACCGTGCTGGTACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTATTAATGAACCTGTTGCGACAACAGAGGCTCTAGAAGCACTTGCCATTCTGTCCAGGTTGAAAGAGACCGCTGGACTTAGTAAACCTGCTTGGATGGTTTTGGCTGAATTCCCTGAAAGCATCAGCCCAATAGTTCTGTCAATTGCTGATTCAACACCGGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTCTGTGTTAGGAGAGATTGTTGCTACTGCATCTGGATGTATATCTTCAATAGCCAAGAGAATAATCAATTCTAGTTCTACAAATATGAAGGTCAAAATTGGGGGAGCTGCAATTCTTATTTGTGCTGCTAAAGAAAATCACCAGAGGCTGGTGGAGGATCTAAATTTATCAAACTTGTGTGCTAATCTTGTACAGTCGCTCGTTGATATGTTTATTTCTTCACAGGCTACTTTGGTTAATCAGGACAATGATAAGAAGGAAGTCATCAGCATATGCAGGCATACAAAAGATGCCAGTGATGGTAAATCCACTAACAGCACCACCATTATATCTGGTGCCAATGTAGCTATATGGTTACTGTCTGTTCTTGCCAGCCATGACGAAAAAGCTAGAATTGCAATAATGGAGGCTGGAGCGATTGAGATTCTCACTGACAGGATTGAAAATTTCCCCTCACAGTACAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGAGTTGTGCTTTGTTGTTGGCAATATTGTTTCAAGACAGGGATATCATAAGAGCACATGCAACCATGAAATCTATACCAGCCCTTGTCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCTATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTTTATCTGTGGCAAATTCTGGGGCGCCGGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATGATGATATACAGGATCTTCTGGAATTGTCAAATGAATTTTCATTGGTGCCTTATCCTGACCAAGTTGCTCTCGAGAGGTTGTTTAGAGTTGATGACATTAGAGTTGGTGCCCCTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTACTCAAACCGATTCCAGATCGCCCAGGCGCACCATTTTTGGCACTTGGGATCATGACTCTGCTTGCTACAGATTGTCCATCAAATAAGATTGCAATGGCAGAGTCTGGGGCCATAGAGGCACTTACCAAGTACCTTTCACTGGGTCCACAAGATGCAATTGAAGAAGCTGCCACAGATCTGTTGGGAGTTTTGTTTAGTAGTGCTGAGATAAGGAAACACGAGTCTTCATTTGGTGCTGTTAATCAAATTATAGCTGTGCTACGTTTAGGCGGAAGAGCTGCAAGGTATAGTGCTGCTAAAGCATTGGCAAGTTTATTCTTAGCTGACAACATTAGAAATGCAGAGAATGCCCGGCATGCTATTAAACCCTTGGTGGAGATGCTTAATACTGGCTCAGAAAGAGAGCAACATGCTGCAATTTCTGCGTTAGTCAAGTTACTGAGTGAAAATCCTTCAAGAGCACTTGTTATTGCTGATATTGAGAAGAATGTCATTGATGTTCTTTGCAGAATTCTTTCATTAGATTGTCCAATGGATTTCAAAGGGGATGCTGCTGAACTATGTTGTGTTCTCTTTGCAAATACAAAGATTCGATCCACAGTAGCTGCTGCGCGGTGTGTTGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTAGTCCTGCTCATGATTCAGTCGTCCGGGCATTGGATAGGCTTGTTGGTAATGAGACATTGGCTGAACTAGTTGTTGCACATGGTGCAGTTATTCCTCTCGTTGGCCTACTTTTTGGTAGGAACTTTGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGGAAAGATCGACCTAATTGTAAAATTGAAATGGTGAAAGCTGGTGTCATTGAAAGTATACTTGACATCCTTCCTGAAGCACCGGATTATCTATGTGCAGCTTTTACTGAATTGTTACGTATATTGACCAATAATGCTACCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCATTGTTCTTTTTGCTAACAAGGCAAGAATTTGGGTCTGACGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACACCCACAGTGCCGTGCTGATTACACATTAACTTCTCACCATGCTATAGAACCCCTCATCCCCTTGCTCGAATCTCAAAAAGCAGAAGTGCAACAGTTGGTTGCTGAGCTTCTCTCGCATCTGCTTTTAGAAGAACACCTTCAGAAGGACCCAGTGACACAGCAAGTAATTGGCCCTCTTGTGCGAGTTCTTGGTTCTGGCATACAAATATTGCAGCAGAGAGCTTTAAAGGCCCTTGTCAGTATTGCAACTGTATGGCCAAATGAAATTGCAAAAGAGGGTGGAGTTCTTGAAATTTCTAAAGTGATATTGCAAGCTGACCCTTCCATTCCTCATACTTTATGGGAGTCTGCGGCCTCTGTTTTAGCAAGTATTCTGCAATTTAGTTCTGAGTTCTACTTGGAAATTCCTGTTGCTGTTTTGGTAAGGTTGCTTCAATCTGGATCAGAGACCACGGTTAGTGGTGCATTAAGTGCTCTTCTTGTATTGGAAAGTGATGATGGAACTACCGCAGTCGCAGAGGCAATGGCTGAAACCGGTGCCGTAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGCGAGGACACAGCTGCAAGACTCTTAGAAGTATTACTGAACAATGTAAAGATTAGAGAAACAAAGGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGATCCACAAACTCAATTACAGCAAGCGAGGTTATTAGCAACTTTGGCTCTAGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAGCTGATGCAGTCGCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTTGCCATATGCGCTCTGCAAAACCTTGTGATGCACAGCCGATCAAATAAAAGAGCAGTTGCAGAGGCCGGTGGGGTTCAGGTTATACTCGATCTAATTGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCGATAACTGCTGCTATTGAAAAGGATTTATGGGCTACTGGAACTGTGAATGAAGAGTATCTTAAAGCCTTGAATTCTCTATTTAGCAATTTCCCGCGACTGAGAGCAACTGAACCAGCAACACTTAGCATCCCACATCTGGTTACATCCTTAAAGACTGGTTCAGAGGCTACTCAGGAAGCTGCCCTGGATGCTCTTTTTCTGCTCAGGCAAGCTTGGTCAGCGTGCCCAGCAGAAGTTTCTAGAGCTCAGTCCATAGCAGCCGCAGATGCTATTCCCTTGTTACAGTTTTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTCTATTGCAGTGTTTGCCGGGTACATTGGTGGTGATTATCAAGTGCGGTAATAATATGAAACAGTCTGTTGGAAACCCGAGTGTTTACTGTAAACTTACACTTGGAAACACTCCTCCACAGCAAACCAAGGTGGTTTCAACTGGCCCCAATCCAGAGTGGGATGAGAGTTTCTCATGGTCCTTTGAAAGTCCTCCCAAAGGCCAGAAGCTTCATATTTCTTGCAAAAACAAGAGTAAAATGGGAAAGAGCTCATTTGGGAAAGTGACAATCCAGATCGACCGGGTGGTGATGCTGGGGGCAGTATCCGGAGAGTACACTCTGTTGCCTGAAAGTAAAAGTGGCCCCTCAAGAAATTTAGAAATAGAATTTCAATGGTCCAACAAGTAA 6465 0.43 MATAMTWRFTPNNGTSLAANEERNGDGKAQDSEAPTSHSVQKMGLRERSSSGMEDADGTLASIAQSIEQLRRSSSSMQEKEYSLKKLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSEEGQVAAAKTIFAVSQGDAKDHVGSKIFSTEGVVPVLWEQLQKGLKGGSVVDSLLTGALKNLYSGTERFWNATVQSGGVDILLKLLTTGQSSTLANVCFLLACMMMEDASFCSKLLTADATKQLLKLLGPGNDAPVRAEAAGAIKSLSAQCQDARKEIANCNGIPALINATIAPSKEFMQGEYAQAIQENAMSALANISGGLSYVISSLSKSLESCSSPTQTADTLGALASALMIYDDKAEYTKASDPLAVEQTLLEQFKPRSPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAAKEVQDELLKALLTLCNSECSLWRALQGREGVQQLISLLGLSSEQQQECAVALLCLLSDENVESKWAITAAGGIPPLVQILESGSSKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLRDGSAASDAINTMIKLLSSTKEETQAKSASALSGIFETRKDVSESNIAVKTLLSAMKLLNVESRSILVESSRCLAAIFLSIKENREVAANARDALFSLVELASSSVLEVAELATCAVANLLLDSEIAEKVIVEEVIFPATRVLRDGTRSGKIHAARAISRLLHSRQVDYAVNDCVNRAGTVLALVSFLDSAINEPVATTEALEALAILSRLKETAGLSKPAWMVLAEFPESISPIVLSIADSTPVLQDKAIEILSRLCKDQPSVLGEIVATASGCISSIAKRIINSSSTNMKVKIGGAAILICAAKENHQRLVEDLNLSNLCANLVQSLVDMFISSQATLVNQDNDKKEVISICRHTKDASDGKSTNSTTIISGANVAIWLLSVLASHDEKARIAIMEAGAIEILTDRIENFPSQYSQIDYKEDSSMWSCALLLAILFQDRDIIRAHATMKSIPALVNLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAPGGLISLLGCADDDIQDLLELSNEFSLVPYPDQVALERLFRVDDIRVGAPSRKAIPALVDLLKPIPDRPGAPFLALGIMTLLATDCPSNKIAMAESGAIEALTKYLSLGPQDAIEEAATDLLGVLFSSAEIRKHESSFGAVNQIIAVLRLGGRAARYSAAKALASLFLADNIRNAENARHAIKPLVEMLNTGSEREQHAAISALVKLLSENPSRALVIADIEKNVIDVLCRILSLDCPMDFKGDAAELCCVLFANTKIRSTVAAARCVEPLVSLLVSEFSPAHDSVVRALDRLVGNETLAELVVAHGAVIPLVGLLFGRNFVLHEAISRALVKLGKDRPNCKIEMVKAGVIESILDILPEAPDYLCAAFTELLRILTNNATIAKGPSAAKVVEPLFFLLTRQEFGSDGQHSALQVLVNILEHPQCRADYTLTSHHAIEPLIPLLESQKAEVQQLVAELLSHLLLEEHLQKDPVTQQVIGPLVRVLGSGIQILQQRALKALVSIATVWPNEIAKEGGVLEISKVILQADPSIPHTLWESAASVLASILQFSSEFYLEIPVAVLVRLLQSGSETTVSGALSALLVLESDDGTTAVAEAMAETGAVEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQLQQARLLATLALGDLFQNEGLARTADAVAACRALVNVLEDQPTEEMKVVAICALQNLVMHSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQFLIQSGPPRFQEKAEFLLQCLPGTLVVIIKCGNNMKQSVGNPSVYCKLTLGNTPPQQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02617 2154 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g02617 2154 SUPERFAMILY ARM repeat 1188 1569 IPR016024 -
Vifa2g02617 2154 Gene3D - 402 646 IPR011989 -
Vifa2g02617 2154 Gene3D - 1366 1694 IPR011989 -
Vifa2g02617 2154 Gene3D - 1700 1820 IPR011989 -
Vifa2g02617 2154 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2033 2142 IPR035892 -
Vifa2g02617 2154 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 28 2154 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vifa2g02617 2154 SMART C2_3c 2034 2130 IPR000008 -
Vifa2g02617 2154 Pfam C2 domain 2033 2129 IPR000008 -
Vifa2g02617 2154 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1828 1871 IPR000225 GO:0005515
Vifa2g02617 2154 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1381 1615 - -
Vifa2g02617 2154 Gene3D - 1821 2029 IPR011989 -
Vifa2g02617 2154 SMART arm_5 1440 1480 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 1734 1772 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 1566 1608 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 817 859 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 481 523 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 1230 1271 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 525 565 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 311 360 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 94 135 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 136 176 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 733 771 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 1860 1900 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 1399 1439 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 567 607 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 1610 1649 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 1312 1353 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 268 309 IPR000225 GO:0005515
Vifa2g02617 2154 SMART arm_5 1482 1522 IPR000225 GO:0005515
Vifa2g02617 2154 SUPERFAMILY ARM repeat 217 608 IPR016024 -
Vifa2g02617 2154 MobiDBLite consensus disorder prediction 30 46 - -
Vifa2g02617 2154 Gene3D C2 domain 2032 2154 IPR035892 -
Vifa2g02617 2154 MobiDBLite consensus disorder prediction 1 56 - -
Vifa2g02617 2154 CDD C2 2035 2125 - -
Vifa2g02617 2154 Gene3D - 52 401 IPR011989 -
Vifa2g02617 2154 Gene3D - 1178 1360 IPR011989 -
Vifa2g02617 2154 SUPERFAMILY ARM repeat 822 1161 IPR016024 -
Vifa2g02617 2154 SUPERFAMILY ARM repeat 1618 2031 IPR016024 -
Vifa2g02617 2154 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2033 2154 - -
Vifa2g02617 2154 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Vifa2g02617 2154 Pfam Armadillo/beta-catenin-like repeat 526 565 IPR000225 GO:0005515
Vifa2g02617 2154 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Vifa2g02617 2154 Coils Coil 297 317 - -
Vifa2g02617 2154 ProSiteProfiles C2 domain profile. 2014 2131 IPR000008 -
Vifa2g02617 2154 Gene3D - 823 1167 IPR011989 -
Vifa2g02617 2154 Gene3D - 647 822 IPR011989 -
Vifa2g02617 2154 SUPERFAMILY ARM repeat 535 859 IPR016024 -
Vifa2g02617 2154 SUPERFAMILY ARM repeat 67 277 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02617 Vifa-Chr2 695250113 695258992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02617 358 605 U-box Gene Family AT3G46510 26.687 3.14e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02617 - - gmx:100816765 3520.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02617 2 695250113 695258992 Vifa2g02617 2 695250113 695258992 ECH
Vifa2g02617 2 695250113 695258992 Vifa2g02617 2 695250113 695258992 PCT