Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02611 ATGACATCTTCACCAGTCGATACCTGCAAATTCGAGGATTTGCAGTTTGACATTGAGAAGAACGTGCCACAGGATGTAAGGTCTCAGTGGATTCTTAATGCTCCTGAGCCTCCAAGTCCTTGGCATGTGGCTGCAGATTCTGTGAGAAAAAATGTTTCTAACTTTAGAGACAAAGTTTCCTCTCTAAGTGATCGATCTTGCGGTACAGTCCTACTTTCGGCTTTGCAGGTTCTTTTTCCTATACTTGTTTGGGGAAGAAGCTACACTGCTGCTAAATTTAGGAAAGATTTTCTTGCTGGACTCACTATTGCTAGCCTATGTATCCCACAGAGCATAGGATATGCAACATTAGCAAACCTTGCTCCTCAATATGGACTTTATACGAGTGTTGTACCACCGTTGATCTATGCTGTAATGGGAACTTCGCGAGAGATAGCAATTGGTCCTGTCGCGGTGGTTTCGTTGTTGTTATCATCAATGGTGCAGAAACTAGTAGACCCTTCTACTGATCCAGTTGGTTACACAAAGCTTATTTTTCTTGCAACTCTCTTTGCTGGTATCTTTCAAACTTCATTTGGACTATTCAGGTTGGGGTTCCTTGTGGATTTTCTGTCACATGCTGCAATTGTTGGATTTGTAGCAGGAGCTGCAATTGTGATTGGGCTTCAACAGTTGAAGGGACTGTTTGGAATCACTCATTTTACAACCAAAACAGACATAATCTCTGTCTTGAAAGCTGTTTGGGAAGCATTTCATAATCCTTGGAACCCTCATAATTTTATCTTGGGAGGATCTTTCTTGGTGTTCATCCTAACAACTAGATTTCTGGGTAAAAGGAAGAAGAATCTGTTCTGGTTGGCATCAATTGCACCCCTTGTATCTGTCATACTGTCAACTCTAGTTGTTTTTCTAACTCGAGCCGATAAAAATGGCGTAAAAATTGTGAAACATGTCAAAGGAGGACTCAATCCAATCTCTATCAATCAGTTAGACTTTAACGGTCCACATGTTGTAGATGTTGCCAAAATCGGACTTGTTGTTGCTGTGGTTGCTCTTACCGAATCTGTTGCTGTTGGACGATCTTTTGCGTCGATCAAAGGATACCAGCTCGATGGAAACAAAGAGATGATGTCAATAGGCTTCACAAACATCATTGGATCTCTCACCTCGTGTTATGTTGCAACTGGTTCATTCTCTCGGACCGCGGTTAACTACGCAGCTGGATGTGAAAGTTTAATATCAAACGTTGTGATGGCAGTTACAGTGATGATATCACTGCAGTTTTTGACAAATCTATTGTATTATACACCAATTGCTATCATTGCATCAGTGATCCTCTCTGCTCTACCAGGACTCATAGACATAACTGAAGCATACAAAATTTGGAAAGTTGATAAACTTGACTTTCTTGCTTGCATCGGAGCCTTCTTCGGTGTACTCTTTGCTTCCGTCGAGATTGGTCTTCTAGTCGCGGTGGTAATATCTTTTTCAAAGATAATTCTGATATCGATTCGACCAAGCACAGAAACATTAGGAAAGCTTCCAGGAACTGATTTGTTCTGTGATGTTGATCAGTATCCTATGGCGATTCAAATTCCAGGTGTTATCATAATACGTATGAAATCCGCATTGCTTTGTTTTGCAAATGCGAATTTCGTTAAAGAAAGAATCATCAAATGGGTTACTCAAGAAGAATCAGAAGATGACAAGGGAAACTCAAAGAGTACAATTCAACTCGTAATTCTTGAAACCTCGAATTTGGTGAATATTGACACTTCTGGAATTGCTTCTTTGGAGGAACTGTACAAGAATTTGTCTTCACAAGGGAAACAGTTGGCGATTGTGAATCCGAGGTGGCAAGTGATACATAAGCTGAAGGTGTCGAAGTTTGTCGACAAAATAGGTGGGAGAGTTTGTCTGACTGTCGAAGAAGCTGTTGTTGCAGGGTGCAAGAGTAACCAGTTCTGA 1968 0.409 MTSSPVDTCKFEDLQFDIEKNVPQDVRSQWILNAPEPPSPWHVAADSVRKNVSNFRDKVSSLSDRSCGTVLLSALQVLFPILVWGRSYTAAKFRKDFLAGLTIASLCIPQSIGYATLANLAPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMVQKLVDPSTDPVGYTKLIFLATLFAGIFQTSFGLFRLGFLVDFLSHAAIVGFVAGAAIVIGLQQLKGLFGITHFTTKTDIISVLKAVWEAFHNPWNPHNFILGGSFLVFILTTRFLGKRKKNLFWLASIAPLVSVILSTLVVFLTRADKNGVKIVKHVKGGLNPISINQLDFNGPHVVDVAKIGLVVAVVALTESVAVGRSFASIKGYQLDGNKEMMSIGFTNIIGSLTSCYVATGSFSRTAVNYAAGCESLISNVVMAVTVMISLQFLTNLLYYTPIAIIASVILSALPGLIDITEAYKIWKVDKLDFLACIGAFFGVLFASVEIGLLVAVVISFSKIILISIRPSTETLGKLPGTDLFCDVDQYPMAIQIPGVIIIRMKSALLCFANANFVKERIIKWVTQEESEDDKGNSKSTIQLVILETSNLVNIDTSGIASLEELYKNLSSQGKQLAIVNPRWQVIHKLKVSKFVDKIGGRVCLTVEEAVVAGCKSNQF 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02611 655 ProSiteProfiles STAS domain profile. 545 649 IPR002645 -
Vifa2g02611 655 NCBIfam sulfate permease 80 637 IPR001902 GO:0016020|GO:0055085
Vifa2g02611 655 Gene3D STAS domain 505 651 IPR036513 -
Vifa2g02611 655 Pfam STAS domain 526 645 IPR002645 -
Vifa2g02611 655 CDD STAS_SulP_like_sulfate_transporter 526 635 - -
Vifa2g02611 655 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271|GO:0008272
Vifa2g02611 655 FunFam Sulfate transporter 31 505 652 - -
Vifa2g02611 655 SUPERFAMILY SpoIIaa-like 530 646 IPR036513 -
Vifa2g02611 655 Pfam Sulfate permease family 93 473 IPR011547 GO:0016020
Vifa2g02611 655 PANTHER SULFATE TRANSPORTER 61 651 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02611 Vifa-Chr2 694482390 694486433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02611 24 648 Inorganic Solute Cotransporters AT5G10180 67.891 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02611 K17469 - gmx:100781327 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02611 2 694482390 694486433 Vifa2g02611 2 694482390 694486433 ECH
Vifa2g02611 2 694482390 694486433 Vifa2g03084 2 880731079 880731798 ECH