Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02610 ATGAGTCCATCAACACCATCTCTTCCACCATTACAAGTGTTGATGGACCTTGAGAATGAGAACAATGGTAGGGAAAACAGAAAACTGTGGGTGCTGAATCCTCCAGAGCCACCATGCATGCTGCATCGAGCCGTGGACAATATCAAGGACAGCGTCTTACATTGTCCGAATCCGAACAGATTCTTTTCTCTCAAACATGAACCTTTGGATAAAACAGTGTTACCTTTGTTGCATGGTTTGTTTCCCATTCTTAAGTCATTAAAAAACTATGATGCTCATAAGTTCAAGTGTGATGTATTGGCGGGTTTAATCCTCGCAATCTTCGCTATTCCTCAGGCTATGGGAAATGCGAGTTTGGCTAAGATGAGTCCTGAATATGGCCTATATACAAGTATTGTTCCACCTCTTATTTATGCATTGCTGGCGAGTTCGAGGGAGATAGTAATAGGACCTGTAACTGTGGATTCATTGCTACTTTCTTCAATGATTCAAACATTGAAAGATCCTATAAATGATTCCATTGCTTATACTCAACTTGTTTTGACTGCAACTTTTTTTACTGGTGTATTCCAAGTTGCATTTGGATTCCTCAGATTTGGTTTTCTGGTGGATTATCTTTCTCATGCCACGATAATCGGATTCTTGGCAGCCGTAGCCATAGGCATTGTATTACAACAATTGAAAGCACTATTTGGAATCACTAACTTTACCAACAAGGCTGATTTAATCTCCGTGATTAAATCTCTTTGGTCATCTTACAAAAACCAATCAGAATGGCATCCTTACAATTTTATTATTGGATTCTCATTTTTTTCTTTCATTATATTTGCTAGAATCCTGGGGAAAAGGAAAAAGAAATTCTTGTGGTTATCACACATGGCTCCTCTTGTTTCATTCATTATATCAACTGTTATAGCATATAGAGTAAATGTTCATCATCTCAAACTCGAAGACTATAAAATCGAAGTTTTAGGACCAATCAAAGGAGGTAGTTTGAATCCAAGTTCACTCAATCAATTACAACTTGATGGTAATGATAAATATTTGGGTCCATTGATCAAAATAGCATTGACAGTTGCGATTATTTCAACAACGGAATCTGTGGCTGTTGGAAGAATATATGCATCACTAAGAGGTTACAATATTGATCCAAACCGAGAAGTTCTATCCTTAGGGATAATGAACATTTTTGGATCATTCACTTCTTGCTATGTTGCATCAGGTTCTATTGCTCGTACGGCTGTAAATTATAACGCTGGCTCGCAAACAATGGTATCGAGTATAGTGATGGCAGTAACAGTGTTAACGTCACTTAAATTTTTGACAAAACTGTTATATTTCACTCCGAAAGCAATGCTAGCAGCAATAATTCTTTCAGCTGTACCAGGACTTATTGATTATAAAAAAGCATACGAAATTTGGAAAGTTGATAAATTCGATTTTCTTGCATGTGCTGGAGCATTCCTTGGAGTGTTGTTTTCGTCTGTGGAAATAGGCCTTGCAATTGGGGTCATGATATCATTCGCGAAGATAATTTTGATATCGATTCAACCTGGTGTAGCGGTTATTGGAAGGTTTCCGGGAACCGATGCATTTGGCGACGTGGAACAATATCCAATGGCGATTAACATGTCCGGAGTTTTGGTTGTTAGCATAAAATCTGCATGGCTTTGTTTTGCAAATGCAAGTCCTATAAGGGAAAGGATTGAGAGATGGGTGATCGAAGAAAAAGGCGAAAATGGTAAAGGAGAAAGCACCATCAAAGTTGTTATTATTGATACATCAAGTCTTGTGAGTATTGACACAGCAGGAATAGCTTCTCTGGTGGAGCTGAATAATAATCTTAGGTCGTATGGAGTCATGTTATCCATTGCTAACCCAAGGTGGCAAGTGATTCACAAACTAAGATTGGCTAACTTTGTAGCTGAAATTGGAGGAAGGGTTTTTCTGTCTGTGGGAGAAGCTATTGATGCAATACTTAGTGCTAAAATGGCTAACGTATAA 2004 0.3812 MSPSTPSLPPLQVLMDLENENNGRENRKLWVLNPPEPPCMLHRAVDNIKDSVLHCPNPNRFFSLKHEPLDKTVLPLLHGLFPILKSLKNYDAHKFKCDVLAGLILAIFAIPQAMGNASLAKMSPEYGLYTSIVPPLIYALLASSREIVIGPVTVDSLLLSSMIQTLKDPINDSIAYTQLVLTATFFTGVFQVAFGFLRFGFLVDYLSHATIIGFLAAVAIGIVLQQLKALFGITNFTNKADLISVIKSLWSSYKNQSEWHPYNFIIGFSFFSFIIFARILGKRKKKFLWLSHMAPLVSFIISTVIAYRVNVHHLKLEDYKIEVLGPIKGGSLNPSSLNQLQLDGNDKYLGPLIKIALTVAIISTTESVAVGRIYASLRGYNIDPNREVLSLGIMNIFGSFTSCYVASGSIARTAVNYNAGSQTMVSSIVMAVTVLTSLKFLTKLLYFTPKAMLAAIILSAVPGLIDYKKAYEIWKVDKFDFLACAGAFLGVLFSSVEIGLAIGVMISFAKIILISIQPGVAVIGRFPGTDAFGDVEQYPMAINMSGVLVVSIKSAWLCFANASPIRERIERWVIEEKGENGKGESTIKVVIIDTSSLVSIDTAGIASLVELNNNLRSYGVMLSIANPRWQVIHKLRLANFVAEIGGRVFLSVGEAIDAILSAKMANV 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02610 667 CDD STAS_SulP_like_sulfate_transporter 538 650 - -
Vifa2g02610 667 ProSiteProfiles STAS domain profile. 557 659 IPR002645 -
Vifa2g02610 667 Pfam STAS domain 538 655 IPR002645 -
Vifa2g02610 667 Gene3D STAS domain 517 662 IPR036513 -
Vifa2g02610 667 PANTHER SULFATE TRANSPORTER 71 660 IPR001902 GO:0016020|GO:0055085
Vifa2g02610 667 NCBIfam sulfate permease 82 651 IPR001902 GO:0016020|GO:0055085
Vifa2g02610 667 SUPERFAMILY SpoIIaa-like 545 659 IPR036513 -
Vifa2g02610 667 Pfam Sulfate permease family 95 485 IPR011547 GO:0016020
Vifa2g02610 667 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02610 Vifa-Chr2 694261139 694263907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02610 24 664 Inorganic Solute Cotransporters AT5G10180 52.795 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02610 K17469 - gmx:100817841 890.567