LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g02576	ATGTGCGGAATCTTAGCAGTGTTAGGCGTCGTCGACAACTCCCAGTCCAAACGCGCCCGAATCATCGAACTCTCTCGCAGATTGAAACACAGAGGCCCCGATTGGAGCGGTTTGCATTGTTATCAAGATTGTTACCTTGCTCATCAACGCCTTGCCATTGTTGACCCTACTTCCGGAGATCAACCTCTCTACAACGAAGACAAAACCGTTATTGTCACTGTGAATGGGGAGATCTACAACCACAAGAAGTTGAAACAGGAACTGACTTCTCATCAGTTTCGAACCGGTAGTGATTGTGAAGTCATTGCTCATCTTTATGAAGAACACGGTGAAGAGTTTGTTGATAAGCTGGATGGGATGTTCTCATTTGTGCTACTTGACACTAAAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGAATTACCCCACTTTACTTGGGTTGGGGCCATGATGGATCAATATGGTTTGCATCCGAAATGAAAGCTCTGGTTGATGACTGTGAGAGATTAATATCTTTTCCTCCGGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCAACATGGTTCTCAGAGCAAATTCCATCAACACCCTATGAACCGAAAATTTTGCGTGAGACCTTTGAGAGGGCTGTAATTAAAAGACTGATGACTGATGTGCCTTTTGGAGTTCTTTTGTCGGGAGGACTCGACTCATCACTTGTTGCTGCGGTGGCCAATCGATATTTGTCTCAATCTGATGCTGCTAGTCAGTGGGGATCACAGTTACATACTTTCTGCATTGGTTTAAAGGGCTCTCCGGATTTGAAAGCTGCAAAAGAGGTAGCAGATTATCTTGGCACTCGCCACCACGAACTTCATTTCACGGTTCAGGAAGGTATAGACGCACTTGAGGAAGTCATTTACCATACTGAAACATATGATGTAACAACTGTGAGAGCAAGTACTCCAATGTTTCTCATGTCTAGGAAAATCAAATCATTGGGAGTGAAAATGGTTCTTTCCGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTCCATAAGGCACCTAACAAGCAAGAGCTTCATGAAGAAACATGCCGAAAAATCAAAGCACTTCATCTTTATGATTGCCTTAGAGCCAATAAATCAACTTCAGCTTGGGGTATAGAGGCACGTGTACCGTTCTTGGATAAAGAATTTATCAGCACAGCCATGGCTATCGATCCGGAGTGGAAAATGATAAGGCCTGATCTTAAAAGAATAGAGAAATGGATAGTGCGCAATGCATTTGATGATGATGAGAAACCATATTTGCCAAAGCACATATTGTATCGACAGAAGGAACAGTTCAGTGATGGTGTCGGATACAGTTGGATCGATGGTTTGAAGGATCATGCTAGTGCACAAGTCACAGATGCAATGTTGAAGCATGCCAACTTTGTTTACCCTGAAAACACTCCTACCACAAAAGAGGGATACCACTATAGGACAATTTTTGAGAAGTTATTTCCAAAGAGTGCTGCGAGGTCAACAGTTCCAGGAGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAACAATCTTGATCCTTCTGGTCGTGCCGCACTTGGAGTTCATTCAGATGCATACAAGGATGCAGCAGGTACCGAAATAGCCGAGCCCGAAAATGGATCCCTCTGA	1713	0.4361	MCGILAVLGVVDNSQSKRARIIELSRRLKHRGPDWSGLHCYQDCYLAHQRLAIVDPTSGDQPLYNEDKTVIVTVNGEIYNHKKLKQELTSHQFRTGSDCEVIAHLYEEHGEEFVDKLDGMFSFVLLDTKDKSFIAARDAIGITPLYLGWGHDGSIWFASEMKALVDDCERLISFPPGHIYSSKQGGLRRWYNPTWFSEQIPSTPYEPKILRETFERAVIKRLMTDVPFGVLLSGGLDSSLVAAVANRYLSQSDAASQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHHELHFTVQEGIDALEEVIYHTETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKQELHEETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKEFISTAMAIDPEWKMIRPDLKRIEKWIVRNAFDDDEKPYLPKHILYRQKEQFSDGVGYSWIDGLKDHASAQVTDAMLKHANFVYPENTPTTKEGYHYRTIFEKLFPKSAARSTVPGGPSVACSTAKAVEWDAAWSNNLDPSGRAALGVHSDAYKDAAGTEIAEPENGSL	570

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g02576	570	FunFam	Asparagine synthetase [glutamine-hydrolyzing]	2	192	-	-
	Vifa2g02576	570	Gene3D	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	2	192	IPR029055	-
	Vifa2g02576	570	PIRSF	Asn_synthetase_glu-h	1	362	IPR006426	GO:0004066\|GO:0006529
	Vifa2g02576	570	PIRSF	Asn_synthetase_glu-h	357	516	IPR006426	GO:0004066\|GO:0006529
	Vifa2g02576	570	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	200	484	-	-
	Vifa2g02576	570	Pfam	Glutamine amidotransferase domain	48	165	IPR017932	-
	Vifa2g02576	570	FunFam	Asparagine synthetase [glutamine-hydrolyzing]	195	514	-	-
	Vifa2g02576	570	CDD	Asn_Synthase_B_C	211	456	IPR001962	GO:0004066\|GO:0006529
	Vifa2g02576	570	PANTHER	ASPARAGINE SYNTHETASE	1	555	-	-
	Vifa2g02576	570	Pfam	Asparagine synthase	210	361	IPR001962	GO:0004066\|GO:0006529

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g02576	Vifa-Chr2	683427204	683431194	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g02576	69	164	PRT Gene Family	AT4G34740	35.849	6.14e-08	53.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g02576	K01953		-	gmx:732660	1053.89

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