Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02568 ATGTCTAATCCGAACCTAGATTCCCATGACTCGACCCGAATACAAGATCCAAATACCAATAGCAACGCCGACCCTCAGATTCCGCTTCGGAACCTATCCCTGGTTCGGACCAGAATCGATTCTCTACGAACATTTCTCTCCCAATCCATCAACACCAACACTCCCTTCACCAACGATCAAATAACCGTCGTCTCAAACCAGATCGCCTCCGCTATCAACAACACCATAGTCAACGCCGCCGCCCTAGTCTCTCACTCTCAAAATCTCACCGTTCCCGCACCCTCCCAGATGCTCGATTCGAAAATCGAACCACCTGACAGCAACTATCTCACCCTCGATGACTCCGACTCCGAAATCTTGGAGCTCGACGCCGTGGAATTGCTCGCGGAACATCACCATTTCTGCGAGATTTGCGGGAAAGGCTTCAAGCGCGACGCGAATCTCCGGATGCACATGAGAGCGCACGGGAACAAATTCAAGACACCTGAAGCGTTGGCGAAGCCTTTGGACTCCGCCGCACGCCGCGGTTCGAGGCTGTTCTCATGTCCGTTCGAAGGGTGTAACAGAAACAAGAAGCATAGAAAATTCAAGGCGTTGAAATCTGTGATTTGTCTTAAGAATCATTTCAAGAGGAGTCATTGTCCGAAGATGTATTCGTGTGATCGGTGTCATAAGAACAAGTATTCGGTGCTTTCGGATTTGAAGAGCCATATGAGACAGTGTGGGGAGTGTAGGTGGAAGTGTTCATGTGGGACCACGTTTTCTAGGAAGGATAAGTTGTTTGGACATATTGGTCAGTTTGAGGGTCACATGCCTGCTGTTGTATTGGAAGACGAGGAAGAGAAAGGGAAACAAGTTGTGGTGGAGGAGAGTGAAGATCCTATGGATATGGATGAAGAGTTCTTTGATGATTTTGGGTTTATTGATGAGTATTGTTTAAGAGAAGTTTTGGGGTTTTCTAATAGCTAG 969 0.4778 MSNPNLDSHDSTRIQDPNTNSNADPQIPLRNLSLVRTRIDSLRTFLSQSINTNTPFTNDQITVVSNQIASAINNTIVNAAALVSHSQNLTVPAPSQMLDSKIEPPDSNYLTLDDSDSEILELDAVELLAEHHHFCEICGKGFKRDANLRMHMRAHGNKFKTPEALAKPLDSAARRGSRLFSCPFEGCNRNKKHRKFKALKSVICLKNHFKRSHCPKMYSCDRCHKNKYSVLSDLKSHMRQCGECRWKCSCGTTFSRKDKLFGHIGQFEGHMPAVVLEDEEEKGKQVVVEESEDPMDMDEEFFDDFGFIDEYCLREVLGFSNS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02568 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Vifa2g02568 322 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Vifa2g02568 322 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 17 93 IPR044300 GO:0010044|GO:0010447
Vifa2g02568 322 SUPERFAMILY beta-beta-alpha zinc fingers 130 156 IPR036236 -
Vifa2g02568 322 MobiDBLite consensus disorder prediction 1 28 - -
Vifa2g02568 322 Gene3D Classic Zinc Finger 130 201 - -
Vifa2g02568 322 SMART c2h2final6 180 213 IPR013087 -
Vifa2g02568 322 SMART c2h2final6 133 155 IPR013087 -
Vifa2g02568 322 SMART c2h2final6 218 239 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02568 Vifa-Chr2 682085877 682086845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02568 112 278 C2H2 Transcription Factor Family AT1G34370 58.721 1.92e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g02568 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02568 - - cam:101491258 431.795