Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02566 ATGTATGTGGAAATGAAACTAGTGTCTGTTCTATTGCTATTCTTGGCTACCGTTTATTCTTCCGCGCTTCCTCAGCTTGATTTACAAGAAGACGCGCTGTATGCACTGAAGTTATCTCTGAATGCTTCACCCAGCCAGCTTACAAACTGGAACAAAAATCAAGTAAACCCTTGTACTTGGTCCGATGTTTACTGCAACCAGAATAGCAATGTCGTTCAAGTTTCACTAGCTTTTATGGGATTCACTGGAACTTTGACGCCAAGAATAGGAGCTCTAAAAAGTCTTACAACTCTTTCTTTACAAGGGAATAGCATCACCGGTGACATACCAAAAGAATTTGGAAATCTTACAAGCTTGGTGAGATTGGATCTGGAAAACAACATGTTAACCGGTGAAATACCATCTTCCCTTGGTAACCTTAAAAAGCTTCAATTCTTGACATTAAGTCAGAACAATCTCAAAGGGACTATTCCAGAATCACTTAGCAGTATCCCAAACTTGATCAATCTTCTGTTAGACTCAAATGATCTTAGAGGACAGATTCCAGAACAGTTGTTCAATGTTCCTAAGTACAAGTATGTATGTTTCACTGAAAATAAGTTGAATTGTGGCGTGGGTTATCAGCATCTTTGCATATCTGATAGTGCAAATCAAGGTTCTTCACACAAACCAAAAGTAGGCCTCATAGTTGGAACAGTTATAGGTTTGATTCTTCTTCTTTTTCTTGGTAGCTTTTTGTTTTTCTGGTGCAAAGGGTACAAGCGTGAAGTTTTTGAAGATGTTCCAGGTGAAGTTGATCGGCGAATTACATTAGGTCAAATAAAAAAGTTTTCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGCGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTACAAAGGTGTTTTAGCTGATGGGACAAAAATTGCAGTTAAAAGGCTAACTGATTATGAAAGTCCCGGGGGTGATCAAGCTTTCCAGCGGGAAGTTGAGATGATAAGCGTAGCTGTCCATAGGAACCTTTTACGGCTCATTGGGTTTTGTTCTACTCCAACGGAACGCCTCTTAGTTTATCCTTTCATGCAGAACTTAAGTGTTGCTTCTCGACTACGAGAGCTCAAACCTGGGGAATCCGTTTTGAATTGGGCTACAAGAAAAGGAGTGGCTCTTGGAACAGCTCGAGGCCTTGAATATCTTCATGAACAATGTGATCCTAAAATTATTCATAGGGATGTAAAGGCAGCAAATATATTACTAGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTGGCAAAACTGGTTGATGTTCGAAGGACTAATGTGACAACTCAAATTCGCGGGACAATGGGCCATATAGCTCCTGAATACTTCTCTACAGGAAAGTCTTCAGAAAAGACAGATGTTTTTAGTTACGGAGTTATGCTTTTGGAGCTTGTTACAGGTCAACGTGCAATTGACTTTTCACGTTTGGAAGATGAAGATGATGTGTTATTGCTTGACCATGTGAAGAAGCTACAACGGGAGAAAAAACTAGACGCAATTGTTGACAGCAACCTTAAAAATGAGTACAATATAGAAGAGGTTGAAATGATAGTACAAGTTGCATTACTGTGCGCACAAGGTATGCCAGAAGATCGTCCGGCAATGTCAGAGGTTGTAAGAATGTTGGAGGGAGAAGGGCTGACTGAAAGATGGGTAGAATGGCAGCATGTGGAGGTTACTCGGAGGCAAGACTCGGAGAGACTGCAAAGAAGATTTGCATGGGGAGAAGATTCAATTCATAACCAAGATGCCATTGAGTTGTCGGGTGGAAGATGA 1839 0.4057 MYVEMKLVSVLLLFLATVYSSALPQLDLQEDALYALKLSLNASPSQLTNWNKNQVNPCTWSDVYCNQNSNVVQVSLAFMGFTGTLTPRIGALKSLTTLSLQGNSITGDIPKEFGNLTSLVRLDLENNMLTGEIPSSLGNLKKLQFLTLSQNNLKGTIPESLSSIPNLINLLLDSNDLRGQIPEQLFNVPKYKYVCFTENKLNCGVGYQHLCISDSANQGSSHKPKVGLIVGTVIGLILLLFLGSFLFFWCKGYKREVFEDVPGEVDRRITLGQIKKFSWRELQIATDNFSEKNVLGQGGFGKVYKGVLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCSTPTERLLVYPFMQNLSVASRLRELKPGESVLNWATRKGVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRRTNVTTQIRGTMGHIAPEYFSTGKSSEKTDVFSYGVMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDAIVDSNLKNEYNIEEVEMIVQVALLCAQGMPEDRPAMSEVVRMLEGEGLTERWVEWQHVEVTRRQDSERLQRRFAWGEDSIHNQDAIELSGGR 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02566 612 SMART serkin_6 289 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02566 612 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
Vifa2g02566 612 FunFam Somatic embryogenesis receptor kinase 1 258 365 - -
Vifa2g02566 612 Gene3D Ribonuclease Inhibitor 26 225 IPR032675 -
Vifa2g02566 612 FunFam Putative LRR receptor-like serine/threonine-protein kinase 26 213 - -
Vifa2g02566 612 FunFam Somatic embryogenesis receptor-like kinase 1 366 583 - -
Vifa2g02566 612 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Vifa2g02566 612 SUPERFAMILY L domain-like 30 203 - -
Vifa2g02566 612 Pfam Protein kinase domain 290 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02566 612 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Vifa2g02566 612 SUPERFAMILY Protein kinase-like (PK-like) 267 564 IPR011009 -
Vifa2g02566 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Vifa2g02566 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 572 - -
Vifa2g02566 612 Gene3D Phosphorylase Kinase; domain 1 258 365 - -
Vifa2g02566 612 Gene3D Transferase(Phosphotransferase) domain 1 366 583 - -
Vifa2g02566 612 ProSiteProfiles Protein kinase domain profile. 289 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02566 Vifa-Chr2 681225525 681234131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02566 8 612 Receptor kinase-like Gene Family AT5G10290 72.414 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa2g02566 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02566 - - gmx:100786654 955.666