Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02565 ATGTATGTGGAAATGAAACTAGTGTCTGTTCTATTGCTATTCTTGGCTACCGTTTATTCTTCCGCGCTTCCTCAGCTTGATTTACAAGAAGACGCGCTGTATGCACTGAAGTTATCTCTGAATGCTTCACCCAGCCAGCTTACAAACTGGAACAAAAATCAAGTAAACCCTTGTACTTGGTCCGATGTTTACTGCAACCAGAATAGCAATGTCGTTCAAGTTTCACTAGCTTTTATGGGATTCACTGGAACTTTGACGCCAAGAATAGGAGCTCTAAAAAGTCTTACAACTCTTTCTTTACAAGGGAATAGCATCACCGGTGACATACCAAAAGAATTTGGAAATCTTACAAGCTTGGTGAGATTGGATCTGGAAAACAACATGTTAACCGGTGAAATACCATCTTCCCTTGGTAACCTTAAAAAGCTTCAATTCTTGACATTAAGTCAGAACAATCTCAAAGGGACTATTCCAGAATCACTTAGCAGTATCCCAAACTTGATCAATCTTCTGTTAGACTCAAATGATCTTAGAGGACAGATTCCAGAACAGTTGTTCAATGTTCCTAAGTACAATTTCACTGAAAATAAGTTGAATTGTGGCGTGGGTTATCAGCATCTTTGCATATCTGATAGTGCAAATCAAGGTTCTTCACACAAACCAAAAGTAGGCCTCATAGTTGGAACAGTTATAGGTTTGATTCTTCTTCTTTTTCTTGGTAGCTTTTTGTTTTTCTGGTGCAAAGGGTACAAGCGTGAAGTTTTTGAAGATGTTCCAGGTGAAGTTGATCGGCGAATTACATTAGGTCAAATAAAAAAGTTTTCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGCGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTACAAAGGTGTTTTAGCTGATGGGACAAAAATTGCAGTTAAAAGGCTAACTGATTATGAAAGTCCCGGGGGTGATCAAGCTTTCCAGCGGGAAGTTGAGATGATAAGCGTAGCTGTCCATAGGAACCTTTTACGGCTCATTGGGTTTTGTTCTACTCCAACGGAACGCCTCTTAGTTTATCCTTTCATGCAGAACTTAAGTGTTGCTTCTCGACTACGAGAGCTCAAACCTGGGGAATCCGTTTTGAATTGGGCTACAAGAAAAGGAGTGGCTCTTGGAACAGCTCGAGGCCTTGAATATCTTCATGAACAATGTGATCCTAAAATTATTCATAGGGATGTAAAGGCAGCAAATATATTACTAGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTGGCAAAACTGGTTGATGTTCGAAGGACTAATGTGACAACTCAAATTCGCGGGACAATGGGCCATATAGCTCCTGAATACTTCTCTACAGGAAAGTCTTCAGAAAAGACAGATGTTTTTAGTTACGGAGTTATGCTTTTGGAGCTTGTTACAGGTCAACGTGCAATTGACTTTTCACGTTTGGAAGATGAAGATGATGTGTTATTGCTTGACCATGTGAAGAAGCTACAACGGGAGAAAAAACTAGACGCAATTGTTGACAGCAACCTTAAAAATGAGTACAATATAGAAGAGGTTGAAATGATAGTACAAGTTGCATTACTGTGCGCACAAGGTATGCCAGAAGATCGTCCGGCAATGTCAGAGGTTGTAAGAATGTTGGAGGGAGAAGGGCTGACTGAAAGATGGGTAGAATGGCAGCATGTGGAGGTTACTCGGAGGCAAGACTCGGAGAGACTGCAAAGAAGATTTGCATGGGGAGAAGATTCAATTCATAACCAAGATGCCATTGAGTTGTCGGGTGGAAGATGA 1830 0.406 MYVEMKLVSVLLLFLATVYSSALPQLDLQEDALYALKLSLNASPSQLTNWNKNQVNPCTWSDVYCNQNSNVVQVSLAFMGFTGTLTPRIGALKSLTTLSLQGNSITGDIPKEFGNLTSLVRLDLENNMLTGEIPSSLGNLKKLQFLTLSQNNLKGTIPESLSSIPNLINLLLDSNDLRGQIPEQLFNVPKYNFTENKLNCGVGYQHLCISDSANQGSSHKPKVGLIVGTVIGLILLLFLGSFLFFWCKGYKREVFEDVPGEVDRRITLGQIKKFSWRELQIATDNFSEKNVLGQGGFGKVYKGVLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCSTPTERLLVYPFMQNLSVASRLRELKPGESVLNWATRKGVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRRTNVTTQIRGTMGHIAPEYFSTGKSSEKTDVFSYGVMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDAIVDSNLKNEYNIEEVEMIVQVALLCAQGMPEDRPAMSEVVRMLEGEGLTERWVEWQHVEVTRRQDSERLQRRFAWGEDSIHNQDAIELSGGR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02565 609 FunFam Somatic embryogenesis receptor-like kinase 1 363 580 - -
Vifa2g02565 609 SUPERFAMILY Protein kinase-like (PK-like) 264 561 IPR011009 -
Vifa2g02565 609 ProSiteProfiles Protein kinase domain profile. 286 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02565 609 SUPERFAMILY L domain-like 30 191 - -
Vifa2g02565 609 Gene3D Transferase(Phosphotransferase) domain 1 363 580 - -
Vifa2g02565 609 FunFam Somatic embryogenesis receptor kinase 1 255 362 - -
Vifa2g02565 609 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Vifa2g02565 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Vifa2g02565 609 Gene3D Phosphorylase Kinase; domain 1 255 362 - -
Vifa2g02565 609 SMART serkin_6 286 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02565 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 569 - -
Vifa2g02565 609 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
Vifa2g02565 609 FunFam Putative LRR receptor-like serine/threonine-protein kinase 26 210 - -
Vifa2g02565 609 Pfam Protein kinase domain 287 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02565 609 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Vifa2g02565 609 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02565 Vifa-Chr2 681225525 681234131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02565 8 609 Receptor kinase-like Gene Family AT5G10290 72.937 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa2g02565 Pkinase 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02565 - - gmx:100786654 963.37