Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02563 ATGGCTGTTACACCGTTTGGTAATACTTCAGCTGCTCAATGGGGAATTCGTCCCCAGCTTATCGCCAGATCCACCACCATGGCCAGGTTTGCATCGGCAAGCCAGAATGCTTCAAGCAGGGTAAACTTTATGGCTGCCCCAAGTTCAACCTTTTTTGCTCGGGATTCCTTGCGTTTTGACATTGGCTCATATCAAACTTTGCATCGTCAAAGGGGATCAAGGTTCATAGTTAGAGCAGAGACAGATTACTACACTGTCCTTGGGGTGTCAAGAAATTCTACCAAATCTGAAATTAAGACTGCTTATCGAAAGCTAGCCCGGAATTATCACCCAGATGTGAACAAGGAACCTGGTGCAGAAGACAAATTTAAGGAAATTAGTAATGCTTATGAGGTCTTATCAGATGATGAGAAACGATCCATATATGACAAATATGGAGAGGCAGGGCTCAAGGGTTCAGGAATGGGCGGCATGGGGGATTTCAGCAATCCTTTTGATCTGTTTGAGACCCTATTTGAGGGCATGGGTAGTGGCAGCAGCAGAGGTTCTTGGAATGGAGCAGTGGATGGCGAAGATGAGTATTACAGTCTTATTTTGAATTTTAAAGAAGCTATTTTCGGAGTGGAAAAGGAGATAGAGATAAGGCGACTTGAGAATTGTGGAACTTGCGATGGTTCAGGTGCTAAACCAGAAACTCGAACACCTTGCGGTACATGTTCTGGGGATGGTCGGGTGAGGAAAACAAAGCGGATAAGTCTCAAGGTTCCGGCTGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAACGAAGGTAACACTGGAAGGCGCGGAGGTTCTCCCGGTGATCTCTTTGTTGTTCTTGAAGTTACCCCAGATCCCGTGCTTAAACGAGAAGACACCAACATTTTATACTCTTGTAAAGTGTCCTACATTGATGCAATCTTGGGGACTACACTTAAGGTTCCAACTGTAGATGGCATGGTGGATTTAAAAATCCCCACCGGGACACAACCGGGATCAACACTTGTTATGGCCAAGAAAGGTGTTCCACTGCTGAACAAAAAGAACATGAGGGGTGATCAATTGGTTCGAGTGCAAGTTGAGATTCCGAAGAAACTGAGCAGCGATGAGAGAAAACTTATTGAAGAACTCTCGGAGTTGAGCAAAGGCAAGACCACAGCTGCTAGGAGATGA 1194 0.4564 MAVTPFGNTSAAQWGIRPQLIARSTTMARFASASQNASSRVNFMAAPSSTFFARDSLRFDIGSYQTLHRQRGSRFIVRAETDYYTVLGVSRNSTKSEIKTAYRKLARNYHPDVNKEPGAEDKFKEISNAYEVLSDDEKRSIYDKYGEAGLKGSGMGGMGDFSNPFDLFETLFEGMGSGSSRGSWNGAVDGEDEYYSLILNFKEAIFGVEKEIEIRRLENCGTCDGSGAKPETRTPCGTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNTGRRGGSPGDLFVVLEVTPDPVLKREDTNILYSCKVSYIDAILGTTLKVPTVDGMVDLKIPTGTQPGSTLVMAKKGVPLLNKKNMRGDQLVRVQVEIPKKLSSDERKLIEELSELSKGKTTAARR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02563 397 SUPERFAMILY HSP40/DnaJ peptide-binding domain 295 381 IPR008971 GO:0006457|GO:0051082
Vifa2g02563 397 Hamap Chaperone protein DnaJ [dnaJ]. 79 393 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vifa2g02563 397 FunFam Putative Mitochondrial DnaJ chaperone 239 285 - -
Vifa2g02563 397 SMART dnaj_3 81 138 IPR001623 -
Vifa2g02563 397 SUPERFAMILY Chaperone J-domain 79 176 IPR036869 -
Vifa2g02563 397 Gene3D - 290 397 - -
Vifa2g02563 397 Pfam DnaJ domain 82 143 IPR001623 -
Vifa2g02563 397 SUPERFAMILY HSP40/DnaJ peptide-binding domain 188 302 IPR008971 GO:0006457|GO:0051082
Vifa2g02563 397 Pfam DnaJ C terminal domain 195 370 IPR002939 -
Vifa2g02563 397 CDD DnaJ_C 191 373 - -
Vifa2g02563 397 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 207 248 IPR036410 -
Vifa2g02563 397 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Vifa2g02563 397 PRINTS DnaJ domain signature 138 157 IPR001623 -
Vifa2g02563 397 PRINTS DnaJ domain signature 84 102 IPR001623 -
Vifa2g02563 397 PRINTS DnaJ domain signature 102 117 IPR001623 -
Vifa2g02563 397 PRINTS DnaJ domain signature 118 138 IPR001623 -
Vifa2g02563 397 FunFam Chaperone protein dnaJ A6 chloroplastic 79 183 - -
Vifa2g02563 397 CDD DnaJ 82 135 IPR001623 -
Vifa2g02563 397 Gene3D - 215 251 - -
Vifa2g02563 397 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 38 233 - -
Vifa2g02563 397 Gene3D DnaJ domain 79 183 IPR036869 -
Vifa2g02563 397 Gene3D - 189 287 - -
Vifa2g02563 397 FunFam Chaperone protein dnaJ 1, mitochondrial 290 397 - -
Vifa2g02563 397 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02563 Vifa-Chr2 680303993 680308955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02563 83 145 C2H2 Transcription Factor Family AT1G74250 43.478 5.30e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02563 K03686 - gmx:100786143 622.854