Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02554 ATGGAAGAAAGGTATGAAACTATTAAAGATATTGGGTCAGGAAATTTTGGAGTAGCGAAACTTGTGAGGGAGAGACAAAGTGGTAAACTATATGCTATCAAAATCATTGAGAGAGGCCTTAAGATTGATGAACATGTGCAAAGAGAGATTATAAATCATAGATCCTTGAAGCATCCCAATATCGTTAGGTTTAAAGAGGTTTTGTGTACTCCGCTTCATTTAGTTATAGTAATGGAGTATGCTGCGGGAGGAGAATTATTTGAAAAAATATGCAGTGCGGGTAGATTCGACGAAGACGAGGCAAGATATTTCTTTCAACAGTTGATTTCTGGAGTCAGCTACTGTCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTGGAAAATACACTTTTAGATGGAAGCTCTTCACCTCAACTCAAAATATGTGACTTTGGTTACTCCAAGTCTTCTGTTCTACATTCTCAGCCTAAATCAACCGTGGGAACTCCGGCATATATTGCACCTGAGGTTTTGTCAAGAAGAGAATATGATGGAAAGGTTGCTGATGTTTGGTCTTGTGGGGTTACATTGTATGTGATGCTAGTTGGTGGTTATCCTTTTGAAGATCCAGATGATCCAAGAAATTTCAGAAAAACAATTGAGCGAATTCTAAGGGTTCATTATTCTATTCCTGACTATGTTCGCGTCTCAAAAGATTGTAGAAATCTTCTATCTCAAATATTTGTAGCGAATCCTGAGAAGAGAATTACTATACCCGAAATCAAAATGCATCCTTGGTTTCTTAAAAAATTGCCAACGGAATTTGTGGAGGATGAAAAACATAAGTTAGAAAATGATGGGAATTGTGTGGATGATTCATCTCAGAGTATTGAGGAAATATTGTTGGTAATTCAAGAGGCAAGAAAGCCAGGTGAAGGACCAAAACTTGATGGACAATTTGTTGGAGGAGAAATGGAATTTGATGAAATGGATGAAGATGATGATTTTGATAATGATATAGAAACGAGTGATGATTTTGATTATGTTTGTGATATGTGA 1041 0.365 MEERYETIKDIGSGNFGVAKLVRERQSGKLYAIKIIERGLKIDEHVQREIINHRSLKHPNIVRFKEVLCTPLHLVIVMEYAAGGELFEKICSAGRFDEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSSPQLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIERILRVHYSIPDYVRVSKDCRNLLSQIFVANPEKRITIPEIKMHPWFLKKLPTEFVEDEKHKLENDGNCVDDSSQSIEEILLVIQEARKPGEGPKLDGQFVGGEMEFDEMDEDDDFDNDIETSDDFDYVCDM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02554 346 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02554 346 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Vifa2g02554 346 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Vifa2g02554 346 PANTHER SERINE/THREONINE KINASE 3 287 - -
Vifa2g02554 346 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Vifa2g02554 346 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02554 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Vifa2g02554 346 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Vifa2g02554 346 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02554 346 CDD STKc_SnRK2 4 260 - -
Vifa2g02554 346 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02554 Vifa-Chr2 677907998 677910373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02554 4 286 CBL-interacting serine-threonine protein kinases AT4G24400 41.980 9.58e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa2g02554 Pkinase 6.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02554 K14498 - gmx:100807981 559.681