Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02547 ATGAAGAGACTCACCACCTCAGATTCTTCATCTCCTCTCATCACAATCTCTCCCTCAACAGAAGAACATAGTCCGAGGAACAAACATGTGTATGGTATGGAGTTTCAATCCATGATGTTGGATGGATTTGAAGAGGAAGTTTGTGTTGAAGAAGCGGGTCATCATTCAGAGAAGAAACGACGACTGAGAGTGGATCAAGTGAAGGCTTTAGAGAAAAACTTTGAAGTTGAAAACAAGCTTGAACCTGAAAGGAAGGAGAAGCTTGCCATAGAACTTGGGTTGCAGCCCAGACAAGTTGCTGTTTGGTTTCAAAACCGGCGGGCAAGATGGAAGACAAAACAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTACGATGCTCTTAAGCTCAAGTTAGATGCAATTACACAAGACAACAAAGCTTTTCATAAGGAGATTAAGGAATTAAAATTGAAGCTGGAAGAAGAAGAAAAAAGTGCAAGCAGTGTTTTGGTGAAGGAGGAGATGATAACAATGCCTGAATCTGATGAAACCAAGCATAACCCGTCTTCGGAATCATCGATTCCTAGTTTAGAATCTAAGGATCATTTGAATTATGACAGCATGATCAACAACAACAATGAGTTTGGTGTTGGAGAAGCTTCTTCACTCTTTCCAGCGGACTTAAGAGATGGTTCATCTGACAGTGATTCTAGCACAATTTCTTCATCTGGAGGAATTCTTCAAAGTCATCTTTTGTTGTCTCCTGATTCTTCCTCCATGAATTGCTTCCAATACCAGAAATCTTATCATGTGAAAATGGAGGAACACAATTTCTTAAGTGCAGATGAGGCGTGCAATTTTTTTTCAGACGACCAAGCACCAACGTTACAATGGTACTGTCCAGATCAATGGAGTTGA 903 0.4009 MKRLTTSDSSSPLITISPSTEEHSPRNKHVYGMEFQSMMLDGFEEEVCVEEAGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKLDAITQDNKAFHKEIKELKLKLEEEEKSASSVLVKEEMITMPESDETKHNPSSESSIPSLESKDHLNYDSMINNNNEFGVGEASSLFPADLRDGSSDSDSSTISSSGGILQSHLLLSPDSSSMNCFQYQKSYHVKMEEHNFLSADEACNFFSDDQAPTLQWYCPDQWS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02547 300 MobiDBLite consensus disorder prediction 1 27 - -
Vifa2g02547 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 273 IPR045224 GO:0003700
Vifa2g02547 300 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Vifa2g02547 300 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Vifa2g02547 300 SMART HOX_1 56 117 IPR001356 GO:0003677
Vifa2g02547 300 MobiDBLite consensus disorder prediction 163 193 - -
Vifa2g02547 300 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Vifa2g02547 300 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Vifa2g02547 300 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g02547 300 CDD homeodomain 58 114 IPR001356 GO:0003677
Vifa2g02547 300 SUPERFAMILY Homeodomain-like 48 115 IPR009057 -
Vifa2g02547 300 Coils Coil 112 167 - -
Vifa2g02547 300 FunFam homeobox-leucine zipper protein ATHB-6-like 61 107 - -
Vifa2g02547 300 Gene3D - 52 120 - -
Vifa2g02547 300 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Vifa2g02547 300 Pfam Homeodomain 58 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02547 Vifa-Chr2 673754536 673755819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02547 1 300 Homeobox Transcription Factor Family AT4G40060 46.474 7.83e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa2g02547 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02547 K09338 - gmx:100777924 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02547 2 673754536 673755819 Vifa2g02547 2 673754536 673755819 ECH
Vifa2g02547 2 673754536 673755819 Vifa2g02547 2 673754536 673755819 PCT