Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02546 ATGAAGAAGACTTTTCCGTCAAACAACAACCCCAATTTCCACCGTCTACCACCGTGTCCGGTTTACCGTTACCGGAAACCTGGATTCCACTCCAACCACCGTGTTGACCGTCCTCCAGAGCGAAATTCCCCTCATCGTGAGCCTAATTTCATTCTTAAGCTTCTTCATCATGGCCGTGGCTCTCTCCAGAGGGATGATGTTGAGTGTTTGATAGGGAAATGTAAGCCGAATCCGGATAATTTTTGTTTTTACCCATGTGATGGTGTTGCTGCGTCGCTGAATTTTATTCAGTGGACGGATGCGCGTGAAGCTGTTGTTTGGTTCTGGGAATCGAGGCTTGTTGGAGGGCATGATTTTACGCCGGAGTTGATATGGAATGTTATGGTGCCTTCTGATAGGGTTGAGCTTGAAGGTCGTTTAAGAAGCCTTTTTGTGAGCCATGTGAAGGAGTTGATGGAGGGGAAGGAAGTGAAGAAGTGGGTGGAGGAGTGGGATGGTTTATCGAAGGAGATTGCTCGTGTTAAGGGGCTGTTGGGGAAGCCTTTTCCTGCTAGAGTGCAGCAGCAGCATGTTGAAAGAAAGAAAGGGCTTGAGGAGGAGAAGAGTTTGGTTGAGAAGAGGTTGAAGGAGTTTGAGTTTGCGATGGAGTGTGTTTTACAGCACCTGGGAGAGAGTAACGACATGGAGAGTGGTGAAGATTTTGTTTCTGTGTTTAGGTTTGATGGGGGTTTTGATTGGAAGAAGATTCACAGCCTCATTGTTCGGGAACGGAGAAGACTTGAAGAAGGATTGCCCATTTATGCTTACCGGAGGGAAATTCTTCAGCAAATACATCATCAACAGATAACTGTGTTGATTGGAGAGACTGGTTCTGGAAAGAGTACTCAAGTAGTGCAGTTTCTAGCTGATTCTGGCATTGGGGCGGATGGGTCAATTGTTTGCACCCAACCTCGCAAGATTGCAGCCAAGTCATTGGCTCAAAGGAAGTACATGCGTGACAGAAATTTATTTGGGGTATCGTGCATTATAGTTGATGAGGCTCATGAAAGGAGCTTAAATACGGATCTACTGCTGGCATTGATAAAGAATTTACTTTGTGAGAGGGTTGACTTGCGGCTCATCATTATGTCTGCCACAGCTGATGCAAAACAGCTATCCGACTATTTCTATGGCTGTGGAGTTTTTCATGTACACGGGAGAAACTTCCCGGTCGAGATGAGATATGTTCCTTCCGATTATGGAGACCAATCTGGCGCCGCTGCCGTGGAATCCTATGTTGTTGATGTCGTCAGAATGGCAACAGAGATTCACAAAACAGAAAAGGAAGGAACTATTCTTGCCTTTCTGACCTCACAGGTAGAAGTAGAATGGGCCTGTGAAAAATTTAAAGTCCTATCTGCTGTTGCTCTGCCCTTGCATGGAAAACTTACATCCGAAGAGCAATTTCATGTTTTCCAGAACTATCCTGGAAAAAGGAAAGTGATATTTTCAACCAATCTTGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCCGGGTTGGCTAAAGATTGCCGATTTGATCCTAGCACTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCAGCTAATCAAAGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGCAGGTGCTATAGGATGTACTCAGAAGCTGATTATCATTCTATGGAACTAAATCAAGAACCTGAGATTCGGAGAGTTCATCTTGGTGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGCCCCAGTTCAATTGAGATGGCGATCAAGAATCTAATTCAATTAGGATTCATTAAACTGAACAATAATGTTCATGATCTAACTTATGAAGGTAGGTACTTGGCAAGAATGGGGATTGAACCAAGGCATGGTAAACTTATCCTAGGCTGTTTCCAACTTGCTCTGGGCAGAGAAGGTGTTGTCCTTGCTGCCATGATGCCCAATGCTAGTAACATATTTTGCAGATTTGGTAATGAAGGTGATAAGCAAAGATCTGATTGTCTCAAAGTGCAGTTTTGCCATTCTGACGGTGACCTTTTTACACTTCTCTCTGTGTACAAAGAATGGGAGGCTCTGCCTCGAGAGAGGAGGAATAAATGGTGTTGGGAAAACAGCATCAATGCTAAATGTATGAGGAGATGTGAAGACACAGTTTTTGAGTTAGAATCTTTTCTAGAGCGTGAACATGGCTTTGTTGTTCCAAGTTACTGGCGTTGGGATCCTCATACACCTTCTGTTCATGATAAGAATTTGAAAAAGGTTATATTGGCCTCACTTTCTGAAAATGTAGCCATGTTTTCTGGACGCAATCATCTTGGTTATGAAGTAGCGCAAACTGGACAACATGTTCATCTGCATCCATCTTCTTCCTTGCTCGTGTTTGCTCAGAAGCCTAATTGGGTGGTTTTCGGTGACCTTCTCTCAGCGTCTAATGAATATCTGGTCTGTGTTAGTGCTGTTGACTTTCAATCATTACACAACCTTCAACCCCCTCCCTCGTTTGATGTATCCAAAATGGAAGAACGGAAGTTGCAAACCAAGACATTGACTGGTTTTGGCACTATTCTTCTCAAAAGGTTTTGTGGGAAATCCAACAGTAATTTGCTTGGTCATGTTTCACGTATTAGGAAAGCTTGTTTGGATGAAAGAATCTTCGTTGAAGTCATTGTTGACGAGAATCTCATCCAGTTATATGCCGCTTCACACGATATGAGTACTGCTACGATGTTGGTGAGTGATGTTTTAGAATATGAGAAAAAGAGGTTACACACAGAATGTATGGAAAAATGTTTGTATCACGGGTCTGGTTCCTCATCACCTATGGCTTTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTCGAGAAGCATTCCTTGAGTGTTGATGTGTATCACCCAAACATAAATGCAATTGAAGACAAGGAGCTCCTGATGTTTTTTGAGAAGAACACCTCAGGTTCTATATGTGCTGTGTACAAGTTCCCAGGAATGGGGAAGGATCTTGCAGATAGAGAAAAGTGGGGCAAGATAACATTTTTGTCCCCTGATGCTGCCAAAAGAGCCGTTGAGCTGGATGGAGAAGAGTTTTGTGGCTCGTACTTGAAAGTACTTGCTTCACAATCATCTATGGGAGGGGATAAAACATTTTTATTTCCTGAAGTTAAAGCAAGAATTTTCTGGCCCCGCAGACCTAGCAAAGGATTCGGCATAGTTAAATGTGATAAAAATGATGTCAATTTCATGTTGAGAGATTTTTATAACCTTGCAATTGGTGGGAGGTATGTTCGTTGTGCACTTAGTAATAAGTCTATGGACGGTATTATGATAAGTGGGTTTGACAGAGAGCTTCAAGAAACTGAAATTTTGGATGTACTAAGAAATGCTACAAGTAGAAGGATTCTGGACTTTTTTGTGGTATTTCCACCTGAGCCAAAGGATTCTTACATGAGAGCTTTAATTAATTTTGATGGAAGATTACATTTAGAAGCAGCTAAAGCTTTGGAAGAAATTGAAGGAAAGGTGTTGCCTGGATGTTCCTCATGGCAAAAGATACAGTGCCAACAGTTGTTTCATAGCTCCTTGATATTTCCTGCACCAGTGTATCACGTGATTGCGGAACAAGTGGAAAACATACTTGCAAAATTCAATAATTTAAATGGTCTTGAGTGGAACCTAAACAGAACTGCTAATGGTTCCCACCGATTGAAGATAACATCCAATGCCACCAAGAAAGTGGCAGAAGTTAGGAGACCTCTGGAAGAACTGTCAAGAGGGAACATCATTGACCATCGAAGCCTTACTCCTGCTGCTCTACAGCTCATGTCGTCTAGAGAGGGCTTTAGTCTTAAATGCTCCATACAGGAAGAGACTAAAACATACATAGTTTTTGACAAGCAAAACCTGAATTTGAGAATTGTTGGTTCGCCAGAAAAGATTGCTTTGGCTCAGCAGAAGTTAATTCAATCTCTACTCTCCCTCCATGAAGAAAAGCAGTTAGTAATCCCTCTGAGAGGGAGGGACCTACCTCCTGACTTGATGAAACGAGTGGTTAAGAATTTTGGGCCGGATCTTCATGGACTAAAAGAGAAGGTGCCTGGGGCTGATCTCAAACTTAACACACGCCAACAGGCAATTATTCTTATTGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAATAACTTTGGAGATTGCACGTTCAAGCATTCATTTAGTTGAGAGACATGACACAGGACCTAGTTGTGCAATTTGCTTGTGTGAGGTTGAAGATGGATATCAACTTGAAGGCTGTCGTCATTTGTTCTGCCGGTTATGTCTGGTTGAGCAGTGTGAATCTGCTATAAGAAACCAAGGCAGTTTCCCAATATGTTGTGCTCACACGGGCTGTGGAGAGCCTATTCTGCTTACAGATTTCAGAACTCTCCTGTCAAATGACAAGTTGGATGAACTTTTCAGGGCTTCTTTGCGAGCTTTTGTAGCTTCGAGTTCCGGAACTTATAGGTTTTGCCCGTCTCCCGACTGCCCCTCAATTTATCGAGTTGCTGATCCCGATACAGGTAGTGAGCCATTTACTTGTGGGGCATGTTATGAAGACACCTGTACCAAGTGCCACTTAGAATATCATCCATTTGTTTCATGCGAGAGATACGGAGAGCTTAAAAATGACCCAGAGATCTCATCTCTGAGGGAGTGGTGTAAAGGGAAAGAACAAGTCAAGAGCTGCTCTGCTTGTGGGCAAATAATTGAAAAGGTAGATGGGTGCAATCACATTGAGTGCAAGTGCGGAAAACATGTCTGTTGGGTTTGCTTGGAAATCTTTTTAGAAAGTGATGAATGTTATGATCATATGAGAACTATACACTTAACCATATAA 4956 0.4276 MKKTFPSNNNPNFHRLPPCPVYRYRKPGFHSNHRVDRPPERNSPHREPNFILKLLHHGRGSLQRDDVECLIGKCKPNPDNFCFYPCDGVAASLNFIQWTDAREAVVWFWESRLVGGHDFTPELIWNVMVPSDRVELEGRLRSLFVSHVKELMEGKEVKKWVEEWDGLSKEIARVKGLLGKPFPARVQQQHVERKKGLEEEKSLVEKRLKEFEFAMECVLQHLGESNDMESGEDFVSVFRFDGGFDWKKIHSLIVRERRRLEEGLPIYAYRREILQQIHHQQITVLIGETGSGKSTQVVQFLADSGIGADGSIVCTQPRKIAAKSLAQRKYMRDRNLFGVSCIIVDEAHERSLNTDLLLALIKNLLCERVDLRLIIMSATADAKQLSDYFYGCGVFHVHGRNFPVEMRYVPSDYGDQSGAAAVESYVVDVVRMATEIHKTEKEGTILAFLTSQVEVEWACEKFKVLSAVALPLHGKLTSEEQFHVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLAKDCRFDPSTGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRMYSEADYHSMELNQEPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSPSSIEMAIKNLIQLGFIKLNNNVHDLTYEGRYLARMGIEPRHGKLILGCFQLALGREGVVLAAMMPNASNIFCRFGNEGDKQRSDCLKVQFCHSDGDLFTLLSVYKEWEALPRERRNKWCWENSINAKCMRRCEDTVFELESFLEREHGFVVPSYWRWDPHTPSVHDKNLKKVILASLSENVAMFSGRNHLGYEVAQTGQHVHLHPSSSLLVFAQKPNWVVFGDLLSASNEYLVCVSAVDFQSLHNLQPPPSFDVSKMEERKLQTKTLTGFGTILLKRFCGKSNSNLLGHVSRIRKACLDERIFVEVIVDENLIQLYAASHDMSTATMLVSDVLEYEKKRLHTECMEKCLYHGSGSSSPMALFGSGAEIKHLELEKHSLSVDVYHPNINAIEDKELLMFFEKNTSGSICAVYKFPGMGKDLADREKWGKITFLSPDAAKRAVELDGEEFCGSYLKVLASQSSMGGDKTFLFPEVKARIFWPRRPSKGFGIVKCDKNDVNFMLRDFYNLAIGGRYVRCALSNKSMDGIMISGFDRELQETEILDVLRNATSRRILDFFVVFPPEPKDSYMRALINFDGRLHLEAAKALEEIEGKVLPGCSSWQKIQCQQLFHSSLIFPAPVYHVIAEQVENILAKFNNLNGLEWNLNRTANGSHRLKITSNATKKVAEVRRPLEELSRGNIIDHRSLTPAALQLMSSREGFSLKCSIQEETKTYIVFDKQNLNLRIVGSPEKIALAQQKLIQSLLSLHEEKQLVIPLRGRDLPPDLMKRVVKNFGPDLHGLKEKVPGADLKLNTRQQAIILIGNKELKPRVEEITLEIARSSIHLVERHDTGPSCAICLCEVEDGYQLEGCRHLFCRLCLVEQCESAIRNQGSFPICCAHTGCGEPILLTDFRTLLSNDKLDELFRASLRAFVASSSGTYRFCPSPDCPSIYRVADPDTGSEPFTCGACYEDTCTKCHLEYHPFVSCERYGELKNDPEISSLREWCKGKEQVKSCSACGQIIEKVDGCNHIECKCGKHVCWVCLEIFLESDECYDHMRTIHLTI 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02546 1651 Coils Coil 194 214 - -
Vifa2g02546 1651 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 340 349 IPR002464 -
Vifa2g02546 1651 Gene3D - 247 328 IPR027417 -
Vifa2g02546 1651 Gene3D - 329 400 IPR027417 -
Vifa2g02546 1651 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 428 594 IPR001650 -
Vifa2g02546 1651 CDD BRcat_RBR 1524 1577 - -
Vifa2g02546 1651 SUPERFAMILY RING/U-box 1441 1518 - -
Vifa2g02546 1651 Gene3D - 401 573 IPR027417 -
Vifa2g02546 1651 SUPERFAMILY RING/U-box 1522 1579 - -
Vifa2g02546 1651 ProSiteProfiles Zinc finger RING-type profile. 1442 1484 IPR001841 -
Vifa2g02546 1651 SMART ultradead3 262 407 IPR014001 -
Vifa2g02546 1651 CDD DEXHc_RHA-like 281 397 - -
Vifa2g02546 1651 SMART helicmild6 456 554 IPR001650 -
Vifa2g02546 1651 SMART ibrneu5 1509 1574 IPR002867 GO:0008270
Vifa2g02546 1651 SMART ibrneu5 1575 1640 IPR002867 GO:0008270
Vifa2g02546 1651 ProSiteProfiles TRIAD supradomain profile. 1438 1651 IPR044066 -
Vifa2g02546 1651 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 778 855 IPR011709 -
Vifa2g02546 1651 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 576 619 - -
Vifa2g02546 1651 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 401 573 - -
Vifa2g02546 1651 SMART ha2_5 614 710 IPR007502 GO:0004386
Vifa2g02546 1651 SUPERFAMILY RING/U-box 1597 1645 - -
Vifa2g02546 1651 CDD Rcat_RBR_DEAH12-like 1598 1648 - -
Vifa2g02546 1651 CDD SF2_C_RHA 402 562 - -
Vifa2g02546 1651 ProSitePatterns Zinc finger C2H2 type domain signature. 1627 1648 IPR013087 -
Vifa2g02546 1651 Pfam Helicase conserved C-terminal domain 436 553 IPR001650 -
Vifa2g02546 1651 Gene3D - 1570 1649 - -
Vifa2g02546 1651 Pfam IBR domain, a half RING-finger domain 1513 1574 IPR002867 GO:0008270
Vifa2g02546 1651 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 398 IPR014001 -
Vifa2g02546 1651 SUPERFAMILY RNA-binding domain, RBD 1035 1203 IPR035979 GO:0003676
Vifa2g02546 1651 ProSitePatterns Zinc finger RING-type signature. 1458 1467 IPR017907 -
Vifa2g02546 1651 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1570 1649 - -
Vifa2g02546 1651 Gene3D - 576 619 IPR042035 -
Vifa2g02546 1651 Pfam Helicase associated domain (HA2) 615 709 IPR007502 GO:0004386
Vifa2g02546 1651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 731 IPR027417 -
Vifa2g02546 1651 PANTHER ATP-DEPENDENT RNA HELICASE 256 328 - -
Vifa2g02546 1651 FunFam RBR-type E3 ubiquitin transferase 597 703 - -
Vifa2g02546 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1438 1523 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02546 Vifa-Chr2 671687315 671693337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02546 1441 1639 ARIADNE family AT1G05890 28.571 1.07e-11 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02546 K12818 - gmx:100810008 2395.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02546 2 671687315 671693337 Vifa2g02546 2 671687315 671693337 ECH