Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02534 ATGGCTAAGAAGTACGAAGGACGTGCAGTAGGAATAGACCTAGGAACAACGTATTCTTGTGTTGCTGTGTGGCTTGATGATCACAATAGAGTTGAGATTATTCATAATGATCAAGGCAACCGAACCACTCCTTCTGTTGTTGCTTTCAACGATGATCAAAGGTTGATTGGTGATGCTGCTAAGAATCAGGTTGCATCTAACCCGCAAAACACTGTCTTTGATGCGAAAAGATTAATTGGTAGGAAGTTTAGTGATTCAGTTGTTGGAAAAGATATATTGTTGTGGCCATTCAAGGTCATTGCTGGTGTCAATGACAAACCCATGATTACCCTTAAGTATATGGGTCAAGAGAAGCAATTTTGTGCTGAGGAAATATCATCCATGATTCTCTCCAAGATGCGACAAGTTGCAGAGGCATATCTGAATTTGCCTGTCAAGAATGCTGTTGTTACTGTGCCTTCTTACTTCAATGATTCTCAGCGAAAAGCCACCATAGATGCTGGCGCCATTGCAGGCCTTAAGGTTATTCAGATAATCAATGAACCTACTGCTGCTGCGATTGCATATGGTCTTGATAAGAGAAGAAATTGTGATGGTAAAAGAAATATTTTTGTCTTTGACCTTGGTGGTGGGACTTTTGATGTGTCTATCCTCACAATTAAAGGTGATGTTTTTGAAGTAAAAGCCACTGCTGGAGACACTCACCTCGGAGGAGAGGACTTTGATAACAGATTGGTGAACTATTTTGTACAAGAGTTCAAGAAGAAACATAAAGTGGACATTAGTCCTAACCCAAGAGCCTTAAGGAGGTTGAGAACTGCTTGCGAAAGAGCAAAAAGGATACTCTCCTTCGCCTTTGTAACAACAATTGAGGTTGATTCTTTATTTCATGGAATTGACTTCTCTTCATCAATAACTCGTGCCAAGTTTGATGAAATTAATATAGACCTGTTTAATGAATGTATGAAAATCGTGGATAGTTGTCTGAGCGATTCAAAAATCTGCAATAGTGATATAGATGATGTTGTTCTTGTGGGTGGCTCCTCTAGGATTCCCAAAGTGCAAGATCTGTTGCAACACTTTTTCGAAGGAAAAGATTTGTTCAAGGGTATAAATCCAGATGAGGCTGTTGCTTACGGTGCAGCTGTTCAGGCTGCTATTTTGAGTGAAGGCTAA 1176 0.3997 MAKKYEGRAVGIDLGTTYSCVAVWLDDHNRVEIIHNDQGNRTTPSVVAFNDDQRLIGDAAKNQVASNPQNTVFDAKRLIGRKFSDSVVGKDILLWPFKVIAGVNDKPMITLKYMGQEKQFCAEEISSMILSKMRQVAEAYLNLPVKNAVVTVPSYFNDSQRKATIDAGAIAGLKVIQIINEPTAAAIAYGLDKRRNCDGKRNIFVFDLGGGTFDVSILTIKGDVFEVKATAGDTHLGGEDFDNRLVNYFVQEFKKKHKVDISPNPRALRRLRTACERAKRILSFAFVTTIEVDSLFHGIDFSSSITRAKFDEINIDLFNECMKIVDSCLSDSKICNSDIDDVVLVGGSSRIPKVQDLLQHFFEGKDLFKGINPDEAVAYGAAVQAAILSEG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02534 391 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vifa2g02534 391 Gene3D Actin; Chain A, domain 4 237 320 - -
Vifa2g02534 391 PANTHER HEAT SHOCK PROTEIN 70KDA 9 389 IPR013126 GO:0005524|GO:0140662
Vifa2g02534 391 FunFam heat shock 70 kDa protein-like 73 128 - -
Vifa2g02534 391 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vifa2g02534 391 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vifa2g02534 391 Gene3D - 10 386 - -
Vifa2g02534 391 FunFam Heat shock 70 kDa 237 320 - -
Vifa2g02534 391 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
Vifa2g02534 391 Pfam Hsp70 protein 9 389 IPR013126 GO:0005524|GO:0140662
Vifa2g02534 391 Gene3D - 73 128 - -
Vifa2g02534 391 PRINTS 70kDa heat shock protein signature 38 50 - -
Vifa2g02534 391 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa2g02534 391 PRINTS 70kDa heat shock protein signature 211 221 - -
Vifa2g02534 391 PRINTS 70kDa heat shock protein signature 60 68 - -
Vifa2g02534 391 PRINTS 70kDa heat shock protein signature 148 168 - -
Vifa2g02534 391 PRINTS 70kDa heat shock protein signature 371 391 - -
Vifa2g02534 391 PRINTS 70kDa heat shock protein signature 339 355 - -
Vifa2g02534 391 FunFam Heat shock protein 70 10 200 - -
Vifa2g02534 391 Gene3D - 194 368 - -
Vifa2g02534 391 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02534 Vifa-Chr2 669357043 669358405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02534 1 389 Calmodulin-binding Proteins AT5G02500 72.237 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02534 K03283 - gmx:102667578 612.453