Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02532 ATGGGACTTTCAAACTTTCCCTATGCAGCAGAAGGTGTTATGCCTGTGATTTTGATGAACACAGTTTTATCTGTGGTTTTATTGAAGAACATGTTTAGATCCATTCTCCAAATAGTTGGTTGCACATCAAGTACTAATACTAATTCATCATCAAATATTGAAGAAGAAGAAGAAGAAGAAGAAGTGTACTATCAAGAGAGGAGGGTGTCAATAACACAGTACAAGTCATTGTGTAACAACAGGTCCAACATAGGTAGAAGTCCTATGGTAGAGTGTTGTGTGTGTTTGTCTGGTTTTGAAGAAAATCAGGAGGTGAGTGAGTTGCCTTGCAAGCATTTCTTTCATAGAGGTTGTTTAGAGAAATGGTTTGATAATAAACATAGTTCGTGTCCTTTATGTCGTTCTATGGAATAG 414 0.3671 MGLSNFPYAAEGVMPVILMNTVLSVVLLKNMFRSILQIVGCTSSTNTNSSSNIEEEEEEEEVYYQERRVSITQYKSLCNNRSNIGRSPMVECCVCLSGFEENQEVSELPCKHFFHRGCLEKWFDNKHSSCPLCRSME 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02532 137 SMART ringv_2 91 134 IPR011016 GO:0008270
Vifa2g02532 137 SMART ring_2 92 133 IPR001841 -
Vifa2g02532 137 PANTHER - 1 136 IPR044249 -
Vifa2g02532 137 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Vifa2g02532 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 137 IPR013083 -
Vifa2g02532 137 Pfam Ring finger domain 91 134 IPR001841 -
Vifa2g02532 137 SUPERFAMILY RING/U-box 91 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02532 Vifa-Chr2 669270094 669270507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02532 1 135 C3H Transcription Factor Family AT2G04240 37.333 7.33e-24 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02532 K16285 - gmx:100811790 169.474