Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02521 ATGTTAGGAGAAGAAGGAAAAGAGATGAAACCACCTTCCATTAGGAGAACCTATTCACGTTCAGCTTCATGGACAGATCGTTCTCCGAATAGCCGGAAACCGCCACGTCCATGTTTACCACCTCTTCAACCTCTTTCAATCAATAAACGTAGCGTTGAGGAATGGCCAAGTGCTGGATCTGATGATCTTGGTGTTTGGCCACTTCCACAAACTCCAAGAGGGTCTATGTCCATCGCAAAAACCAATGAACCCGTGCAAGATTTTCAGTTTAAAAGAGATAAATTGGCTTTCTTTGACAAAGAGTGTTCTAGAATTGCCGAACATATTTACTTAGGAAGTGACACGGTGGCGAAAAACCATGAGCTTCTTAGACAGAAAGGAATAACACATGTGCTTAACTGTGTTGGATTTGTTTGTCCTGAATATTTCAAAAGTGATTTTGTGTATAAAACACTTTGGTTGCAGGACAGTCCTACAGAGGATATAACGTGTGTTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAACAAGGTGGTCGCGTTCTTGTTCATTGTTGTCAAGGGGTTTCTCGATCGACGGCTTTGGTGATTGCTTATCTCATGTGGAGGAAAGGACAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCGAGGGGAGTAACAAATCCCAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGTGTACATGCTATGCCTGCAAGTCCTAATTCTATTCTAAGGATGTATCGAATGGCTCCTCATTCGCCTTATGACCCTCTTCATCTTGTCCCTAAGATGGTTAACCAACCGGGTTCGCTAGCACTTGATTCTCGTGGTGCTTTCATTGTTCACGTTCCTTCTGCTATTTATGTATGGATTGGAAAAAGTTGTAACTTGTTCATGTCATGCAATGCAAAGAGTGCGGCTTTTCAGGTTGTACGCTATGAAAGGGCAAATGGTCCGATTCTGAGTATCCGTGAAGATCAAGAATCAACTGAGTTTTGGGCTGCTCTTTCTGATGAACAACGTTTATCAGATGATTCTAATAAGCAGCTGGTTTTGCCTACTGACAAGATGGAGATTGGTGTAAGAAAAGTCGATGCTTATGATTTGGATTATGAGATTTTTCACAAGGCGATTTCTGGTGGGGTTGTTCCACCTTTTTCTGAAACGAGTGCTGGATCAGAAACTTGTCTTCCTGCTAGAGAACATGGCTGGGCAAGATTGAGGCGGAAGTTTGCTAGTGGTGTCATGAAAGAAATCTTAACATCTCCCAAATGGAAGTGTGATGTGATTATGGAGGAAGAAAAACAAGATTTTGTAGCTGATGATGATCCCTTGTCTGTGTCACTGTCATCAAACCATCCCAGTGAGTGTGGCTCCCCGGATTCCTTTGAATGTTATCTATCCAGCTTGGACAGAGGAAAAGATACTGTTGAAGCCATGGACTTGTCTGAATCTGATCCTGGTGTTTCTTCTTTGCCGCCACTATCTCCCTGTGGCGGTTATTTTCCTTGTGGTTTTCTATGCAGCAGCCCAAAATTCAATTCCAAGTCGCCAACACTTTCGCCTTCAAGTTCTGATTACGCGAGTTCGTTTACATTTTCGCCTTCCTCTACCAATTGGTCTGACTTGTCGTTCGTGTCTTCTCAGCAGCCATCACCGTCTGGCCAGGAATCAATTGAACCTTTGTATGTTAAAGATCTGTCTTTCTCAACAAGTTCCTCTTTACTTAAGAAAGAAGTTCTTCTATCTTCACCTTCAGAGTCATTTTCGACTGATCATGCCTTGGGAGGGGAAAATTCATATTTGCCATCAAAAGGATCTTTTCTCTCTATTGCACAGCGTAGAGGGAGTAATATACCGCCTCGGATGTTGCTACCCTCTGTCAATGAATCCTCTAAAGTCCACAAGAACCTGGAGGAATACACCTACTAA 1956 0.4264 MLGEEGKEMKPPSIRRTYSRSASWTDRSPNSRKPPRPCLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSMSIAKTNEPVQDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITCVLYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGSLALDSRGAFIVHVPSAIYVWIGKSCNLFMSCNAKSAAFQVVRYERANGPILSIREDQESTEFWAALSDEQRLSDDSNKQLVLPTDKMEIGVRKVDAYDLDYEIFHKAISGGVVPPFSETSAGSETCLPAREHGWARLRRKFASGVMKEILTSPKWKCDVIMEEEKQDFVADDDPLSVSLSSNHPSECGSPDSFECYLSSLDRGKDTVEAMDLSESDPGVSSLPPLSPCGGYFPCGFLCSSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSQQPSPSGQESIEPLYVKDLSFSTSSSLLKKEVLLSSPSESFSTDHALGGENSYLPSKGSFLSIAQRRGSNIPPRMLLPSVNESSKVHKNLEEYTY 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02521 651 Gene3D Protein tyrosine phosphatase superfamily 75 243 IPR029021 -
Vifa2g02521 651 Gene3D Severin 254 351 IPR029006 -
Vifa2g02521 651 SUPERFAMILY Actin depolymerizing proteins 247 348 - -
Vifa2g02521 651 MobiDBLite consensus disorder prediction 1 44 - -
Vifa2g02521 651 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 243 IPR029021 -
Vifa2g02521 651 SMART dsp_5 101 240 IPR020422 GO:0006470|GO:0008138
Vifa2g02521 651 PANTHER MKPA PROTEIN 18 645 - -
Vifa2g02521 651 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 167 221 IPR000387 GO:0016311|GO:0016791
Vifa2g02521 651 Pfam Dual specificity phosphatase, catalytic domain 109 239 IPR000340 GO:0008138|GO:0016311
Vifa2g02521 651 ProSitePatterns Tyrosine specific protein phosphatases active site. 185 195 IPR016130 GO:0016311|GO:0016791
Vifa2g02521 651 ProSiteProfiles Dual specificity protein phosphatase domain profile. 101 243 IPR020422 GO:0006470|GO:0008138
Vifa2g02521 651 MobiDBLite consensus disorder prediction 16 30 - -
Vifa2g02521 651 CDD DSP 102 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02521 Vifa-Chr2 666836725 666839964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02521 1 137 Protein tyrosine phosphatase (PTP) family AT3G55270 41.081 4.20e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02521 - - lja:Lj6g3v0574850.1 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02521 2 666836725 666839964 Vifa2g02521 2 666836725 666839964 ECH
Vifa2g02521 2 666836725 666839964 Vifa2g02521 2 666836725 666839964 PCT