Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02520 ATGGAAACGAACTACGCTACAGAGTTTTCCATGGATCATCGTCCTCGAAAAAGGGCTAAATTGGCTCGGGAACTTCCTCAAACCCACTCAAAGGCTCATTCGGGAATGTATTGTGGACAAGAGTTTGCTAATGTGACAACAAGCTATGGAACATTGAGGGTACTTCCTGACCAAGGTGGTATATCAGTAAAAGGATTTGCGGAAAAAGGTTCTCCCCAATGGCGAGAGGATGATAAAGATGGACATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGGTATAAGATCCTCAGGAAAATCGGTGAAGGGACTTTTGGTCAGGTTTTAGAATGTTGGGATAGAGAAATGAGGGAGGTAGTTGCCATAAAAGTTGTGAGGAGTATAAAGAAATATCGTGAAGCAGCAATGTTAGAAGTTGATGTGCTCCAATTGCTTGGGAAGTATGATAGGAATGGTAGTCGCTGTGTTCAAATACGCAATTGGTTTGACTACCGGAACCATATTTGTATTGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTCCGGAAGAACAATTATCGCCCGTTTCCGGTTGATCTTGTCCGTGAGCTAGGAAGACAATTGTTGGAAAGTGTAGCATTTGTACATGATATGCGCCTCATCCACACTGACTTGAAGCCTGAGAATATACTTTTTATTTCCCCAGAATATGTAAAAGTACCAGACTACAAGGTCATGTTCCGGTCGCCAAAAGAGGCAACCTCTTATAAAAGACTGCCAAAATCAAGTGCTATTAAGGTTATTGACTTTGGTAGTACTGCTTATGAGTACCAAGATCACAACTATATTGTCTCTACTAGGCATTATAGGGCCCCTGAGGTTATTCTTGGACTTGGTTGGGGTTTTCCTTGTGACATATGGAGTATTGGTTGCATTTTGGTTGAGTTGTGCTCGGGAGAAGCTTTGTTTCAGACGCATGAGAATTTAGAGCATCTAGCCATGATGGAGAGGGTTTTAGGCCCAATGCCTCAGCACATGTTGAAAAGAGCAGACCGCCCTGCAGAGAAGTATGTCAGAAGGGGTAGACTAAACTGGCCCGAAGGAGCAGTCTCCCGAGAAAGCATCAAGGCTGTCTTGAAACTACCTCGACTTCCTAATCTGGTGATGCAGCATGTGGATCACTCAGCTGGGGATCTTCTTGATCTCTTGCAGGGTCTACTTCAGTTTGACCCCATGAGCAGGATGAAGGCGCATGAAGCACTCAGGCATCCCTTTTTTACCGGGGAGCGATACCAGAGGTATTAA 1293 0.4377 METNYATEFSMDHRPRKRAKLARELPQTHSKAHSGMYCGQEFANVTTSYGTLRVLPDQGGISVKGFAEKGSPQWREDDKDGHYMFALGENLTSRYKILRKIGEGTFGQVLECWDREMREVVAIKVVRSIKKYREAAMLEVDVLQLLGKYDRNGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVRELGRQLLESVAFVHDMRLIHTDLKPENILFISPEYVKVPDYKVMFRSPKEATSYKRLPKSSAIKVIDFGSTAYEYQDHNYIVSTRHYRAPEVILGLGWGFPCDIWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPMPQHMLKRADRPAEKYVRRGRLNWPEGAVSRESIKAVLKLPRLPNLVMQHVDHSAGDLLDLLQGLLQFDPMSRMKAHEALRHPFFTGERYQRY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02520 430 Gene3D Transferase(Phosphotransferase) domain 1 149 422 - -
Vifa2g02520 430 CDD PKc_CLK 82 422 - -
Vifa2g02520 430 SMART serkin_6 95 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02520 430 ProSiteProfiles Protein kinase domain profile. 95 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02520 430 FunFam Serine/threonine-protein kinase AFC2 171 422 - -
Vifa2g02520 430 ProSitePatterns Protein kinases ATP-binding region signature. 101 131 IPR017441 GO:0005524
Vifa2g02520 430 Pfam Protein kinase domain 95 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02520 430 Gene3D Phosphorylase Kinase; domain 1 82 175 - -
Vifa2g02520 430 SUPERFAMILY Protein kinase-like (PK-like) 82 426 IPR011009 -
Vifa2g02520 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Vifa2g02520 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 11 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02520 Vifa-Chr2 665738796 665742081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02520 95 422 Core Cell Cycle Gene Families AT1G76540 25.664 9.98e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vifa2g02520 Pkinase 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02520 K08287 - qsu:112037155 729.939