Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02518 ATGGGAAACAAAAGTGGTTTTTTCCGTTATGCGGATGGTGTTGACAAGTTGCTATTATTCTTCGGAACTTTGGGTTGTATTGGTGATGGTATTCAAACTCCACTCACTATGCTTGTTCTTGGTAGTTTGATTGATGATTATGCTCGTGGTGGTTCTCAACATACTGTCTCCATTCATACTATCAACAAGTATGCTCTCAAGCTAGTTGCTGTTGCCATTGGAGTTGCTGTATCTGCTTTTATCGTTGGAGTTTGTTGGACAAGAACTGCGGAAAGACAAACTTCTCGAATGCGAATTGAATATCTTAAATCAATCCTCAGACAAGAAGTTGGCTTCTTTGACAAGCAAACTAACTCTTCCACGACTTTCCAAGTAATCGCCACCATAACTTCTGATGCTCAAACAATTCAAGACACCATGTCTGATAAGGTGCCTAGTTGTCTAGTTCACCTTTCCGCGTTTTTCTCTAGCTTTATAGTAGCACTCTTCCTCTCTTGGAGACTTGCTGTAGCTGCTTTTCCATTTTCGATTATGATGATCTTGCCAGCACTCATATTTGGGAATGCTATGAAAGAGTTGGGTGGTAAAATGAAGGACGCGTTCGGAGATGCTGGTAGCATAGCAGAACAAGCGATCTCGTCAGTTCGTACTGTTTATTCGTATGTAGGTGAGAAGCAAACACTAAAAAGGTTCAGTTCTGCTCTTGAAACATGTATGCAGCTTGGCATAAAGCAAGGTCAAACAAAGGGAGTGGTTATTGGAAGTTTCGGTTTGCTATATGCTACTTGGGCATTCCAATCTTGGGTTGGGAGTGTTCTCGTTAGAACCAAAGGAGAAAAAGGTGGCCATGTGTTTTGTGCTGAAATATGCATTATTTGGGGAGGATTGTCTCTGATGAGTGCACTTCCAAATCTTGCTTCCATATTAGAGGCGACAATAGCCGCTACTCGGATTTTCGAGATGATTGATAGAAAGCCAGCCATGGACTCTACCAGAGGAAAAGGAAGGATTTTGAAACATACGAGAGGCGAGATTACATTTAAAGATGTTGAATTTAGTTACCCTTCAAGACCAGATACAATGATTCTCCAAGGACTCAATCTTAAAGTTCAGGCATGTAAAACCGTAGGCCTAGTTGGAGGAAGTGGTTCTGGCAAATCTACTATAATCTCTTTGCTTGAAAGATTCTATGATCCTACACACGGTGAGATATTACTTGATGGTTTTGATACAAAGAGACTACACCTTAAGTGGTTTAGGTCCTTGATAGGATTGGTAAATCAAGAGCCAATTCTCTTTGCAACATCTATAAAAGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGAAGATGTCATAACCGCCGCAAAAGCAGCTAATGCACATGATTTTATTATTAAACTTCCTAATGGATTTGAAACTCAAGTAGGACAACTAGGAGCTCAATTATCTGGAGGACAAAAACAAAGGATTGCTATTGCGAGGGCTTTAATAAGAGATCCTAAAATCCTACTACTTGATGAAGCTACTAGTGCTTTGGATTCACAGTCTGAAAAAGTAGTACAAGATGCACTTGACTTGGCTTCTAGAGGTAGAACAACAATCATCATAGCTCATCGTCTTTCCACGATTCGTAAGGCCGATTCAATCGTAGTACTTCAATCGGGAAAAGTGGTTGAATGTGGTTCACACGATGAACTACTTCAATTAAACAGTGGACGAGGTGGGATTTACACAAAAATGCTACATTTGCAACAGACAAGTCAAAACGAAAATGCGCAGCATCAAATTAACAAGAGCCCTCGTGCAATGGAAAATCTAGCAAGTTCAAATTCAAGCTGGCAAAGTACTCCAATTCATCATGCATTTAGCTCCGCACAACCGTTTAGTCCTATATATTCAATCAGTGTTATAGGATCTAGCTTTGATGAGGACTACAGCAGTGAAAACTTAGAGAAACCATACCGTTCGAACATCTCTTACTGGCGTTTACTACAAATGAATGCTCCTGAATGGAAGCATGCTTTGTTTGGATGTTTAGGTGCCATTGGTTCAGGACTATGCCAGCCATTTTATTCCTATTGCTTAGGAATAGTTGCTTCTGTCTACTTTGTAGATGACAACTCTTTCATTAAATCACAAATCAGGTTGTACTCGATCATCTTCTGCTGCATAGCCACTGTAAACTTCATCTCAGGCATCATTCAACATTACAATTTTTCTATCATGGGAGAGAGTTTGCTTAAAAGAGTGCGAGAGAATTTGCTAGAGAAGGTGCTGACATTTGAGATAGGATGGTTTGATCAAGAGGAAAATTCAAGTGCAGCAATCTGTGCGCGTTTGGCAACGGAAGCCAGCTTGGTTCGATCGCTCGTTGCAGAACGAATGTCGTTGTTAGTTCAGGTCTCCGTCACTGCTTCACTCGCTTTCATACTCGGTTTAATTGTTACATGGAGGGTAGCTATTGTCATGATTGCTATGCAACCTTTGGTCATTGCGTGTCTCTATTCAAAAACTGTTCTCTTGAAGAGTATGTCAGGTAATGCAAAAAGTGCTCAAAGAGATGCTAGTCAATTAGCAATGGAAGCTACAACAAATCACAGGACTATCGCGGCATTTTCGTCCGAGAAAAGGATACTAAATTTATTCAAAACTGCTATGGATGGCCCAAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCTATATTGTCTATGTCACAGTTCATAACAACAGCATCTATAGCCTTGACGTTTTGGTATGGAGGCATATTATTAAATCGTAAACTCGTAGAATCAAAGCATCTCTTGCAAGTTTTCCTCATTTTGATGGGAACTGGACGACAAATTGCCGATACAGGAAGCATGACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTTCAGTGTTTGCAATATTGGATAGAAAAACTCAGATTGAACCTGAAGATACTAGAAACAGAAAAATGAAAAAGACTATGAAGGGTGGTATAAAACTGAAAGACGTGTTTTTCTCGTACCCTGCAAGGCCAGATCAAATGATTCTCAAAGGCCTAACTCTTGAGATTGAAGCTGGCAAAACAGTAGCATTAGTAGGACAAAGTGGCTCAGGAAAATCCACCATCATTGGCTTAATTGAACGATTTTATGACCCTTTTAAGGGATCCGTATTCATAGATAATTGTGACATCAAGGAACTTCATTTGAAAAGTTTGAGATCACATATTGCACTGGTGAGCCAAGAGCCTACCCTCTTTGCAGGAACTATCCGCGACAACATTGTATATGGGAAGGAAAATGCATCAGAGGATGAAATAACAAGGGCCGCGCGCCTTGCAAATGCTCATGACTTTATAAGTTCAATGAGAGAAGGGTATGATACATACTGTGGAGAAAGAGGAGTGCAGCTATCAGGAGGACAGAAGCAAAGGATAGCAATAGCTCGGGCAATGGTGAAGAACCCTTCGATACTTCTGCTAGACGAAGCAACAAGTGCTCTTGACAGTGTATCTGAGAATCTAGTACAAGAAGCTTTGGAGAAAATGATGGTTGGAAGAACATGTGTAGTTATAGCTCACCGTTTATCAACAATACAAAGTGTTGATTCCATAGCTGTAATTAAAAATGGGAAAGTGGTTGAACAAGGCTCTCACTCACACTTACTGAACAATAGATCAAAAAATGGGACTTATTACTCTTTAGTTAGGCTACAACAGAATCACTCAACTTGA 3738 0.4021 MGNKSGFFRYADGVDKLLLFFGTLGCIGDGIQTPLTMLVLGSLIDDYARGGSQHTVSIHTINKYALKLVAVAIGVAVSAFIVGVCWTRTAERQTSRMRIEYLKSILRQEVGFFDKQTNSSTTFQVIATITSDAQTIQDTMSDKVPSCLVHLSAFFSSFIVALFLSWRLAVAAFPFSIMMILPALIFGNAMKELGGKMKDAFGDAGSIAEQAISSVRTVYSYVGEKQTLKRFSSALETCMQLGIKQGQTKGVVIGSFGLLYATWAFQSWVGSVLVRTKGEKGGHVFCAEICIIWGGLSLMSALPNLASILEATIAATRIFEMIDRKPAMDSTRGKGRILKHTRGEITFKDVEFSYPSRPDTMILQGLNLKVQACKTVGLVGGSGSGKSTIISLLERFYDPTHGEILLDGFDTKRLHLKWFRSLIGLVNQEPILFATSIKENILFGKEGASMEDVITAAKAANAHDFIIKLPNGFETQVGQLGAQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSEKVVQDALDLASRGRTTIIIAHRLSTIRKADSIVVLQSGKVVECGSHDELLQLNSGRGGIYTKMLHLQQTSQNENAQHQINKSPRAMENLASSNSSWQSTPIHHAFSSAQPFSPIYSISVIGSSFDEDYSSENLEKPYRSNISYWRLLQMNAPEWKHALFGCLGAIGSGLCQPFYSYCLGIVASVYFVDDNSFIKSQIRLYSIIFCCIATVNFISGIIQHYNFSIMGESLLKRVRENLLEKVLTFEIGWFDQEENSSAAICARLATEASLVRSLVAERMSLLVQVSVTASLAFILGLIVTWRVAIVMIAMQPLVIACLYSKTVLLKSMSGNAKSAQRDASQLAMEATTNHRTIAAFSSEKRILNLFKTAMDGPKKESIKQSWISGSILSMSQFITTASIALTFWYGGILLNRKLVESKHLLQVFLILMGTGRQIADTGSMTSDIAKSGRAISSVFAILDRKTQIEPEDTRNRKMKKTMKGGIKLKDVFFSYPARPDQMILKGLTLEIEAGKTVALVGQSGSGKSTIIGLIERFYDPFKGSVFIDNCDIKELHLKSLRSHIALVSQEPTLFAGTIRDNIVYGKENASEDEITRAARLANAHDFISSMREGYDTYCGERGVQLSGGQKQRIAIARAMVKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQSVDSIAVIKNGKVVEQGSHSHLLNNRSKNGTYYSLVRLQQNHST 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02518 1245 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524|GO:0016887
Vifa2g02518 1245 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
Vifa2g02518 1245 Pfam ABC transporter 363 512 IPR003439 GO:0005524
Vifa2g02518 1245 PANTHER ABC TRANSPORTER B FAMILY 7 688 IPR039421 -
Vifa2g02518 1245 Gene3D - 985 1245 IPR027417 -
Vifa2g02518 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g02518 1245 Pfam ABC transporter transmembrane region 678 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g02518 1245 Pfam ABC transporter transmembrane region 20 276 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g02518 1245 FunFam ABC transporter B family member 4 990 1244 - -
Vifa2g02518 1245 Gene3D ABC transporter type 1, transmembrane domain 67 973 IPR036640 GO:0005524|GO:0016020
Vifa2g02518 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 345 581 IPR003439 GO:0005524
Vifa2g02518 1245 Pfam ABC transporter 1018 1167 IPR003439 GO:0005524
Vifa2g02518 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 318 - -
Vifa2g02518 1245 SMART AAA_5 1027 1213 IPR003593 GO:0016887
Vifa2g02518 1245 SMART AAA_5 372 558 IPR003593 GO:0016887
Vifa2g02518 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 982 - -
Vifa2g02518 1245 FunFam ABC transporter B family member 4 335 595 - -
Vifa2g02518 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 586 IPR027417 -
Vifa2g02518 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1240 IPR027417 -
Vifa2g02518 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g02518 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Vifa2g02518 1245 CDD ABC_MTABC3_MDL1_MDL2 345 586 - -
Vifa2g02518 1245 SUPERFAMILY ABC transporter transmembrane region 664 983 IPR036640 GO:0005524|GO:0016020
Vifa2g02518 1245 Gene3D - 343 599 IPR027417 -
Vifa2g02518 1245 CDD ABC_MTABC3_MDL1_MDL2 1000 1240 - -
Vifa2g02518 1245 SUPERFAMILY ABC transporter transmembrane region 7 326 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02518 Vifa-Chr2 664447994 664452272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02518 7 1241 Calmodulin-binding Proteins AT2G36910 44.373 0.0 1028