Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02514 ATGGGAGAAACCGGTATCAATGTTCCTTACCCACGAAACTTAAACCCTACGGCTCAAGAGTTCACCCCAACAAATCCCGTTCCTCTCTCCGTCGCCGTCGGAGTTCCCTATCCCTACCCTCACTTCGCCGTCACACCTCCGCCGAACCTCTCCACCTTACCCACCCGTTCCGTCCTCCTCAGCCCCGTCCCTCCCACTACTGAATCCGACCTCCGGAAAGATCTCCAAGCCTTTGGTGAAGTCAGAGCTATCCAAACCGATTCCTTCCGTTACGGAATCGTGACGGCTCATTTCTACGACCTCAGACACGCACAGGCGGCGTTCACCGCCATTCGCACTCACCACGTCCACTGTGTTTCGTTTTTTAACCCAATGTCTCAGCCCCAATATCATCCCGCTCCACCACCTCCCCCGTCGGGGCTCGTCGCCGGTGTGCCACTCTGGGCTCACTACGTCTTCTCTGATATTCAGAATCAAGGAACCCTCGTCGTTTTCAACTTAGACGACGACGTTTCACCTGAAAAACTACGACAAGTTTTCGAGCCTTTTGGAGCCATAAAGGAAGTGAGGGAAAATCCAGGGAAGAAAAAGGGTCAAAGATTCGTCGAGTTTTTCGACATAAGAGATGCTGGCAAAGCTTTGAAAGAAATGAATGGAAAAGAATTCCAAGGAAAATCAATTGCTATTGAATTTAGTAAACCAGGTGGTTACGGAAGAAGATTCTTCCATTCAACTAATCCGAATCCTAATGCCTATATCTCCACTAAGCCATTTCATTTCAACTTTCCTCCTCCTCCTCCACCTCCCTCGCCGCCCCGTCGTTACGGTCCACCGCAATTCTCTCACAAGAATTTCAACACTGGTTCAATGAGTTCAAATAGTTTGAATGGGGATGAAAACAATTATTCTCCTAGGAGGAATTTTGGTAGGGAATTCATTGGGGAAAGACCATGGAATTGGAAGGGGAAACAGCCTTATAAGAATGAGACTCGTTATATAATCAAAGAAGATGCCATTGTTGAATCCGATTCTAGAACTACTCTCATGATCAAAAACATACCCAACAAGTACAGTCAGAAGCTACTCTTGAACATGTTGGACAACCACTGTATACGCTGCAACGATCAGATAGGCGACGGCGATGACAAGCCTCTATCTTCCTATGACTTTGTATATCTTCCTATAGATTTCAAGAACAAGTGCAACGTGGGATACGGGTTCGTGAATATGACATCTCCGGAAGCTACTCTAAGGTTCTACAAGGCCTTTCAACAGCAACGTTGGGAGGTTTTTAACTCCAGAAAAGTCTGCCACCTTACCTACGCTAGAGTTCAGGGTTTGGAAGCTTTGAAAGAGCATTTTAAGAACTCAAAGTTCCCGTGTGAGATGGAGCATTATCTGCCGGTGGTGTTTTCACCGCCTCGAGATGGGAAGCAATTAACGAAGCCGTTTCCAGTAGTGGGGAGCATGGTACGCATGGGTGCTGTAGATGATAAGATGGAGGGTCGAGATCATAGGGTGGTGGTAGCAGGTAGTAGTGGTGGCGCTGTTGGTGGTGGTGATGATGATGATGATGATAAATCAGATGTGAAGTGA 1596 0.4731 MGETGINVPYPRNLNPTAQEFTPTNPVPLSVAVGVPYPYPHFAVTPPPNLSTLPTRSVLLSPVPPTTESDLRKDLQAFGEVRAIQTDSFRYGIVTAHFYDLRHAQAAFTAIRTHHVHCVSFFNPMSQPQYHPAPPPPPSGLVAGVPLWAHYVFSDIQNQGTLVVFNLDDDVSPEKLRQVFEPFGAIKEVRENPGKKKGQRFVEFFDIRDAGKALKEMNGKEFQGKSIAIEFSKPGGYGRRFFHSTNPNPNAYISTKPFHFNFPPPPPPPSPPRRYGPPQFSHKNFNTGSMSSNSLNGDENNYSPRRNFGREFIGERPWNWKGKQPYKNETRYIIKEDAIVESDSRTTLMIKNIPNKYSQKLLLNMLDNHCIRCNDQIGDGDDKPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRFYKAFQQQRWEVFNSRKVCHLTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKQLTKPFPVVGSMVRMGAVDDKMEGRDHRVVVAGSSGGAVGGGDDDDDDKSDVK 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02514 531 MobiDBLite consensus disorder prediction 509 531 - -
Vifa2g02514 531 CDD RRM3_EAR1_like 345 446 IPR034458 -
Vifa2g02514 531 Gene3D - 154 256 IPR012677 -
Vifa2g02514 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 227 IPR000504 GO:0003723
Vifa2g02514 531 SUPERFAMILY RNA-binding domain, RBD 161 425 IPR035979 GO:0003676
Vifa2g02514 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 234 IPR000504 GO:0003723
Vifa2g02514 531 MobiDBLite consensus disorder prediction 259 276 - -
Vifa2g02514 531 PANTHER RNA RECOGNITION MOTIF-CONTAINING 336 469 - -
Vifa2g02514 531 MobiDBLite consensus disorder prediction 259 281 - -
Vifa2g02514 531 FunFam Terminal EAR1-like 1 296 451 - -
Vifa2g02514 531 Pfam RNA recognition motif 2 345 455 IPR007201 -
Vifa2g02514 531 SMART rrm1_1 57 122 IPR000504 GO:0003723
Vifa2g02514 531 SMART rrm1_1 161 230 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02514 Vifa-Chr2 663460661 663462798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02514 162 233 Eukaryotic Initiation Factors Gene Family AT2G23350 42.667 2.36e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02514 2 663460661 663462798 Vifa2g02514 2 663460661 663462798 ECH