Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02508 ATGGCACTTCCAACCACACTAATGTTGCACTTGTTGCTTCTTGTCCCAATTTTCATACATTCTTCTCCAGTTCAAGATCCTGAGTCAGTGGTCCAACAAGTCCAAAAGAGCATAATTGAGAATGAAAACAGAAGAAAATTGGGTTATTATTCTTGTAGCACAAACAACCCAATTGATGATTGTTGGAGATGTGACCCCAATTGGGAAAACAACCGCAAACGTCTGGCCGAATGTGCTATCGGATTCGGCCGACATGCAATGGGAGGAAAAGATGGAAAATACTACATGGTCATTGACTCATCTGATGACCCTATAAATCCCAAGCCAGGAACATTAAGACATGCTGTTATCCAACAAGAACCATTATGGATCATTTTCAAACACGACATGGTGATTAATCTTAAAATGGATCTTCTTGTGAACTCCTACAAAACAATTGATGGTAGAGGAGCAAATGTGCACATTGCTGAAGGACCATGTATTAGAATACAACAAAAGACTAACATTATAATTCACGGTATACATATTCATCATTGTGTACGAGGTGGGAGTGGCTATGTGAGTGATTCGCCTAATCATCGCGTGATGAAAACTCGATCGGATGGTGATGGGATTACGATCTTTGGTTCGGAACATGTTTGGGTGGATCATTGTTCTTTGTCGAATTGTTTTGATGGTTTGATTGATGTCGTTCATGGATCGACGGGTGTGACTATTTCGAATAATTATATGACACACCATAACAAAGTCATGCTTTTTGGACATAGTGATTCTTATCAAGAGGATAAAAATATGCAAGCTACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGGAGGAAGAATGCCAAGATGCAGATTTGGATACTTTCATGTGGTGAACAACGATTACACGCATTGGCAACAGTATGCCATAGGTGGAAGTTCGTCCCCAACTATTTTCAGTCAAGGCAATAGATTTCTAGCTCCGGATGATGATGATCACAAAGAGATTACAAAGCATTTTGACTCATCAGAAGGTGAATGGAAGAACTGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGTGCCTACTTCACGCCGTCGGGAGCAGGAGCATCATCTTCGACTTATGCCAAAGCGTCGAGCATGTCAGCACGACCACCTATGCTTGTGGCTTCAATGACAGCAGGAGCAGGAGTTCTTAGTTGCAAAAAGGGTTACCAATGCTACTAG 1218 0.4113 MALPTTLMLHLLLLVPIFIHSSPVQDPESVVQQVQKSIIENENRRKLGYYSCSTNNPIDDCWRCDPNWENNRKRLAECAIGFGRHAMGGKDGKYYMVIDSSDDPINPKPGTLRHAVIQQEPLWIIFKHDMVINLKMDLLVNSYKTIDGRGANVHIAEGPCIRIQQKTNIIIHGIHIHHCVRGGSGYVSDSPNHRVMKTRSDGDGITIFGSEHVWVDHCSLSNCFDGLIDVVHGSTGVTISNNYMTHHNKVMLFGHSDSYQEDKNMQATIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPDDDDHKEITKHFDSSEGEWKNWNWRSEGDLMLNGAYFTPSGAGASSSTYAKASSMSARPPMLVASMTAGAGVLSCKKGYQCY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02508 405 Gene3D - 55 397 IPR012334 -
Vifa2g02508 405 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Vifa2g02508 405 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vifa2g02508 405 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vifa2g02508 405 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vifa2g02508 405 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vifa2g02508 405 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vifa2g02508 405 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vifa2g02508 405 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vifa2g02508 405 PANTHER PECTATE LYASE 18-RELATED 21 402 IPR045032 GO:0030570
Vifa2g02508 405 SUPERFAMILY Pectin lyase-like 31 398 IPR011050 -
Vifa2g02508 405 SMART amb_all 129 326 IPR002022 -
Vifa2g02508 405 Pfam Pectate lyase 138 320 IPR002022 -
Vifa2g02508 405 FunFam Pectate lyase 55 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02508 Vifa-Chr2 661001562 661003123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02508 3 404 Polysaccharide Lyase AT5G63180 66.584 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02508 K01728 - gmx:100801136 667.537