Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02507 ATGGCAATTCCACTCTTATTACTACTTCTTCTTGTACCTTCTTTCATTCAATCTTCCCTCATTCAAGATCCTGAGTTAGTAGTCCAACAAGTACAAAAGAGTATTAATGATTCCAGGAGAAATTTAGCATTTCTTTCTTGTGGAAGTGGCAATCCAATTGATGATTGTTGGAGATGTGACAAAAACTGGGAAAAGAATCGTAAAAGTTTAGCAGATTGTGCTATTGGATTTGGCAAACATGCAATTGGAGGAAGAGATGGTAAAATATATGTAGTAACTGACCCTGGTGATCATCCTGTGAAACCGAAACCAGGAACATTAAGATATGGTGTTATTCAAGAAGAACCGTTATGGATAATCTTCAAACGCGACATGGTGATTAAGCTTAAGCAAGAGCTAATGATGAATTCATTCAAAACAGTTGATGGAAGAGGAACAAATGTGCACATTGCTGGGGGACCTTGTATAACGATGCAATTCGTGACGAATATTATAATTCATGGGATTAATGTGCATGATTGTAAGAGAGGTGGGAATACTTATGTGAGAGATTCACCTACACATTATGGTTTTAGAACACTTTCGGATGGTGATGGGATTTCGATTTTTGGTGGGAGTCATATTTGGGTTGATCATTGTTCTCTTTCGAATTGTCGCGATGGGTTGATCGATGTTATTCATGGATCTACTGCTATTACTATTTCTAATAATTTTATGACTCATCATAATAAGGTTATGCTTTTGGGTCATAGTGATAGTTTCACTAGAGATAAGAATATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTAGTTCAAAGAATGCCAAGATGTAGACATGGATATTTTCATGTGGTGAACAATGATTATACACAATGGAGAATGTATGCTATAGGTGGAAGTGCTAATCCAACAATCAATAGTCAAGGGAATAGATTTCTTGCTTCCAATGATAACACCTTCAAAGAGGTGACGAAGCGTGAGAATGCGGGACAAAGCCAATGGAAGAATTGGAATTGGAGATCAAGTGGCGATTTGATGTTGAATGGTGCATTCTTTAGAGCATCAGGAGCAGGTTCATCATCAAGCTATGCAAGAGCATCAAGTTTAGCAGCAAAACCATCTTCTGTAGTTGCTTCTATCACTGCCTCAGCTGGATCATTAAACTGCAAAAAGGGTTCACGTTGCTGA 1197 0.3768 MAIPLLLLLLLVPSFIQSSLIQDPELVVQQVQKSINDSRRNLAFLSCGSGNPIDDCWRCDKNWEKNRKSLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVKPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTVDGRGTNVHIAGGPCITMQFVTNIIIHGINVHDCKRGGNTYVRDSPTHYGFRTLSDGDGISIFGGSHIWVDHCSLSNCRDGLIDVIHGSTAITISNNFMTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTQWRMYAIGGSANPTINSQGNRFLASNDNTFKEVTKRENAGQSQWKNWNWRSSGDLMLNGAFFRASGAGSSSSYARASSLAAKPSSVVASITASAGSLNCKKGSRC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02507 398 FunFam Pectate lyase 50 391 - -
Vifa2g02507 398 SMART amb_all 124 321 IPR002022 -
Vifa2g02507 398 Pfam Pectate lyase 130 315 IPR002022 -
Vifa2g02507 398 PANTHER PECTATE LYASE 18-RELATED 19 396 IPR045032 GO:0030570
Vifa2g02507 398 PRINTS Pollen allergen Amb family signature 196 217 IPR018082 -
Vifa2g02507 398 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Vifa2g02507 398 PRINTS Pollen allergen Amb family signature 96 121 IPR018082 -
Vifa2g02507 398 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Vifa2g02507 398 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Vifa2g02507 398 PRINTS Pollen allergen Amb family signature 340 364 IPR018082 -
Vifa2g02507 398 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Vifa2g02507 398 PRINTS Pollen allergen Amb family signature 369 392 IPR018082 -
Vifa2g02507 398 SUPERFAMILY Pectin lyase-like 36 392 IPR011050 -
Vifa2g02507 398 Gene3D - 50 391 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02507 Vifa-Chr2 660335956 660337622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02507 1 398 Polysaccharide Lyase AT5G63180 74.752 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02507 K01728 - gmx:100816256 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02507 2 660335956 660337622 Vifa2g02507 2 660335956 660337622 ECH
Vifa2g02507 2 660335956 660337622 Vifa2g01940 2 501740742 501743651 ECH