Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02504 ATGGCGGCTCTGTTACCTTGCACGCCGACTATACTCCCTACTCCGTTTCCGAACCGGAGGAGGGGCAATCTTCCGCTTAAACCTCACTCCCACGCGTTCTCGGGGTGTACGAAACGGTTTCGTCGCGGTTCTCTTTCCGTTGCCCGGTTCGGATTACAGCCCGGGTTTTTACCTGAACCGGAGGACGCGGAATTTGTTGTCAGGGAATTGGTTAACCGAGCGGAGGGTTTGCTTTATACAATTGCTGATGCTGCTGTTTCGAATTCCGATACGGTGGTAACTACCACCGCTGTTAAACAGAGTAACGATTGGCTTTCTGGAATTACTAATTATATGGAGACGATTCTCAAGGTACTCAAGGATGGGCTTTCTACTTTGCATGTGCCGTACGCATATGGTTTTGCAATTATAATGCTCACTGTTCTTGTAAAAGCTGCCACATTTCCGTTGACAAGAAAACAGGTAGAATCTGCAATGGCTATGCGATCTTTGCAACCTCAAGTAGAGGCTATCAAGAAACAGTATGCCGGGGATCAGGAGAGAATTCAACTTGAAACTGCTCGGTTATATAAATTAGCCAACATTAATCCTCTAGCAGGATGTCTGCCTGTTCTCTTAACAACACCAGTGTGGATCGGGCTATATCGAGCTTTTTCTAATGTGGCAAATGAGGGACTCCTTAATGAAGGCTTCTTTTGGATACCTTCTCTTTCTGGTCCTACTATAATTGCAGCTCGGCAAAATGGAAGTGGCATCTCTTGGCTTTTTCCTTTTGTGGATGGCCACCCTCCCCTTGGATGGCCAGATACACTGGCTTACCTTGTCTTGCCTGTTTTGCTGGTTGTTTCTCAATACATTTCTCTTCAAATAATCCAGTCATCACAGGCTACTGACCCCAACGTGAAGACTTCTCAAGTCTTAAACAAGTTCCTTCCATTAGTGATTGGTTATTTTTCTCTTTCAGTTCCTTCAGGTCTTAGCCTTTACTGGTTCACAAATAATATATTGAGCACATTACAACAAATATGGCTTCAAAAGTTAGGAGGTGCAAAAAATCCTTTGAGACAAGTTCTAGATGATAATCTGAACAATGACGTGATACAGATTCAGAAGCCAGTATCTAAACTAAATTCCACAAAAGTTGAAGAGACTAGAAAAGTTGAAAAGTTGACATCAGAGGGGCCAAAACCTGGTGACAGATTTAAGCAATTAATGGAGCAAGAGGCAAGGAAGAGACAAAAGAAAGAAGAAGAAAAAAGGAAGGCTGAAGAAGCAGCAGCAGCAAAAGCTAATCACAAGCAAACAATTGAAGGGCAAAATCAAGCTGCAAACGACTTAGTTGAAAATTCCCAATCCGTGGCTGCTGAAACTGATCCATCTATATCTGGAGTAGTAAATGGCAATCCATTAAGTAAGAACTTGGAGGGAAATCAGAATTCTACATCTACATCTGATACTGAAAATAATGAAGGTTCTGCTCATTTCAATGCAGTAAACGAGAAAAATCTAGAAGAGGAACCAAGAGAAATACTAACAACCACAGCTACTACAAACAAGCAACCTCAAGGAGAAGACTCAGATCGTGTGGCAAAGGATTGA 1599 0.4259 MAALLPCTPTILPTPFPNRRRGNLPLKPHSHAFSGCTKRFRRGSLSVARFGLQPGFLPEPEDAEFVVRELVNRAEGLLYTIADAAVSNSDTVVTTTAVKQSNDWLSGITNYMETILKVLKDGLSTLHVPYAYGFAIIMLTVLVKAATFPLTRKQVESAMAMRSLQPQVEAIKKQYAGDQERIQLETARLYKLANINPLAGCLPVLLTTPVWIGLYRAFSNVANEGLLNEGFFWIPSLSGPTIIAARQNGSGISWLFPFVDGHPPLGWPDTLAYLVLPVLLVVSQYISLQIIQSSQATDPNVKTSQVLNKFLPLVIGYFSLSVPSGLSLYWFTNNILSTLQQIWLQKLGGAKNPLRQVLDDNLNNDVIQIQKPVSKLNSTKVEETRKVEKLTSEGPKPGDRFKQLMEQEARKRQKKEEEKRKAEEAAAAKANHKQTIEGQNQAANDLVENSQSVAAETDPSISGVVNGNPLSKNLEGNQNSTSTSDTENNEGSAHFNAVNEKNLEEEPREILTTTATTNKQPQGEDSDRVAKD 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02504 532 CDD 5TM_YidC_Alb3 133 346 IPR047196 -
Vifa2g02504 532 MobiDBLite consensus disorder prediction 449 496 - -
Vifa2g02504 532 Coils Coil 373 393 - -
Vifa2g02504 532 MobiDBLite consensus disorder prediction 449 532 - -
Vifa2g02504 532 NCBIfam membrane protein insertase YidC 132 346 IPR028055 -
Vifa2g02504 532 MobiDBLite consensus disorder prediction 378 430 - -
Vifa2g02504 532 MobiDBLite consensus disorder prediction 509 523 - -
Vifa2g02504 532 PANTHER OXA1 84 420 IPR001708 GO:0016020|GO:0032977
Vifa2g02504 532 Pfam 60Kd inner membrane protein 132 346 IPR028055 -
Vifa2g02504 532 Coils Coil 401 435 - -
Vifa2g02504 532 MobiDBLite consensus disorder prediction 378 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02504 Vifa-Chr2 657468561 657475022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02504 62 419 Chloroplast and Mitochondria Gene Families AT2G28800 52.500 1.31e-127 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02504 K03217 - gmx:100802546 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02504 2 657468561 657475022 Vifa2g02504 2 657468561 657475022 ECH