Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02501 ATGGTTTGCTGCATAATCAGTAAACTCAAATCCGAACCTCTCTGGTTCCTCCTTCTCTTCTCACTCGGTCTCTTTACAATTCTCAGATTCACTCTAACATTCCTCAACTGGGTCTATGTCAATTTTCTCAGACAACCCAAAAACCTCAAAAAGTACGGATCTTGGGCCCTTGTCACAGGACCCACAGACGGCATTGGAAAAAGCTTCGCCTTTGAGCTCGCTCGCAAAGGCTTGAACCTAATCCTCGTCGGTCGCAACCCCGACAAACTCAAAGACGTTTCAGATTCTATCCAAGCCAAGTTCGGAAAAACCGAGGTTAAAACCGTTGTTGTCGATTTCACGGGTGATCTCGACGAGGGTGTGGATAGAATCCGTGAAACGATTGATGGGTTGGATGTTGGAGTGTTGGTAAACAACGTGGGAATTTCTTACCCTTATGCGAGATTCTTCCATGAATTAGACGAGGAGCTTCTGAAGAATTTGATTAAGGTTAATGTTGTTGGAACTACTAAGGTTACACATGCTGTTTTACCTGGGATGTTGAAGAGGAAGAAGGGGGCTATTGTTAATATTGGTTCTGGTGCTGCTATTGTTATTCCTTCTGATCCACTTTATGCGGTTTATGCTGCCACTAAAGCGTATATTGATCAATTTTCTAGATGTCTCTATGTTGAATACAAGAAGAGTGGGATTGATGTGCAGTGTCAGGTTCCATTATATGTGGCAACAAAGATGGCATCAATTAAGAGATCTTCATTCTTTGTTCCATCAACAGACGGATATGCAAGAGCAGGTGTGAAATGGATCGGATATGAACCTCGTTGCACACCGTATTGGCCACATACCCTTCTTTGGGCTGTGGCATGTTCGTTGCCGGAGTATGTAGTTGATACTTGGCGCCTCGGGTTTTGTATGGGTATTAGAAAGAGGGGGCAGCTCAAAGACTCGAGGAAGCAGGAATAA 963 0.4403 MVCCIISKLKSEPLWFLLLFSLGLFTILRFTLTFLNWVYVNFLRQPKNLKKYGSWALVTGPTDGIGKSFAFELARKGLNLILVGRNPDKLKDVSDSIQAKFGKTEVKTVVVDFTGDLDEGVDRIRETIDGLDVGVLVNNVGISYPYARFFHELDEELLKNLIKVNVVGTTKVTHAVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKRSSFFVPSTDGYARAGVKWIGYEPRCTPYWPHTLLWAVACSLPEYVVDTWRLGFCMGIRKRGQLKDSRKQE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02501 320 PIRSF 11-beta-HSD1 4 314 - -
Vifa2g02501 320 Gene3D - 49 267 - -
Vifa2g02501 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 52 295 IPR036291 -
Vifa2g02501 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Vifa2g02501 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Vifa2g02501 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Vifa2g02501 320 PANTHER RH59310P 14 318 - -
Vifa2g02501 320 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 49 277 - -
Vifa2g02501 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Vifa2g02501 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Vifa2g02501 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Vifa2g02501 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vifa2g02501 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Vifa2g02501 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Vifa2g02501 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02501 Vifa-Chr2 656372036 656373560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02501 5 320 Lipid Metabolism Gene Families AT1G67730 64.557 8.22e-163 454
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02500 2 656302030 656303151 Vifa2g02501 2 656372036 656373560 PCT