Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02500 ATGGATTACACACATTTCTTCCTCGTAGCAACAACCACTTTAGGTCTCATCTCCATCTCCAAATCCCTCTTCCATTTCCTCCACTGGATATACGCCACTTTAATCCGCCCAACAAAGAATCTCAAACACTACGGCTCATGGGCTATCATCACCGGCTCAACCGACGGAATTGGCAAATCCATGGCTCTCGAGTTCGCATCCAACGGACTCAACATTCTCTTACTCGGCCGAAACCCTCTTAAACTCCAAGTAACATCAAAAGACATACTTGATCAATTCAAAAACGTCGAGGTAAAGTGCGTTGTTGTAGACCTACACAACAATACCGGAGACGAAATAATGAAGAAAATAGAACAAGCTATTGATGGTTTAGATGTTGGAATTCTAGTTAATGCTGCTGGTGTAGCTTATCCTTATGCAAGATATTTTCATGAGGTTGATTTGGATTTGATGGATTCTATTATTAAAGTCAATGTAGAAGGAGCAACTTTGGTTACAAAAGCTGTGATTCCTAGTATGATTAAGAAGAAAAAAGGAGCTATTATAAACATTGGTTCTGGTTCCACTGTTGTTCTTCCTTCTTATCCTCTTGTCACACTTTATGCAGCTTCCAAAGCCTATCTTGCCATGTTCTCTGCATGCACCAATTTGGAATACAAACATCAAGGAATTGACATCCAGTGTCAAGTTCCATTATTTGTGTCGACGAAAATGACCAGGATGAAGGCGTCTCTGTTTGTTCCAACACCAGATGTATATAGCAAAACATTTATTTTCTTTACTGGCGGAAAAGAGGACTTGCTAAGGACTCCCAAATCAAAGCAGCGAGTAATTCTGAAGCAAATTAGCATTGATGATGATGCCAAATTTGGTTTTCTGTTTCTGTTAAATCAACATCTCTGTGAAAGATAA 912 0.3947 MDYTHFFLVATTTLGLISISKSLFHFLHWIYATLIRPTKNLKHYGSWAIITGSTDGIGKSMALEFASNGLNILLLGRNPLKLQVTSKDILDQFKNVEVKCVVVDLHNNTGDEIMKKIEQAIDGLDVGILVNAAGVAYPYARYFHEVDLDLMDSIIKVNVEGATLVTKAVIPSMIKKKKGAIINIGSGSTVVLPSYPLVTLYAASKAYLAMFSACTNLEYKHQGIDIQCQVPLFVSTKMTRMKASLFVPTPDVYSKTFIFFTGGKEDLLRTPKSKQRVILKQISIDDDAKFGFLFLLNQHLCER 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02500 303 PIRSF 11-beta-HSD1 1 285 - -
Vifa2g02500 303 Gene3D - 40 287 - -
Vifa2g02500 303 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 41 265 - -
Vifa2g02500 303 CDD 17beta-HSD1_like_SDR_c 45 255 - -
Vifa2g02500 303 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Vifa2g02500 303 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Vifa2g02500 303 PRINTS Glucose/ribitol dehydrogenase family signature 173 189 IPR002347 -
Vifa2g02500 303 PRINTS Glucose/ribitol dehydrogenase family signature 201 220 IPR002347 -
Vifa2g02500 303 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Vifa2g02500 303 PANTHER RH59310P 6 263 - -
Vifa2g02500 303 Pfam short chain dehydrogenase 47 241 IPR002347 -
Vifa2g02500 303 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 262 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02500 Vifa-Chr2 656302030 656303151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02500 7 262 Lipid Metabolism Gene Families AT1G67730 50.973 7.06e-95 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02500 2 656302030 656303151 Vifa2g02500 2 656302030 656303151 ECH
Vifa6g02913 6 965756084 965759166 Vifa2g02500 2 656302030 656303151 PCT
Vifa2g02500 2 656302030 656303151 Vifa2g02501 2 656372036 656373560 PCT