Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02494 ATGTCTTTATTTTCTCTCTTTCTCTTCACTCTTGTTTTCTTAATATCATACACAACTTCACAACTTCAAGAGTTTATAAGCATTGATTGTGGAGGAACAAGAAGTAACTATACTGACATAGCCACAGGGATAACATGGATTTCAGATTCTGAGATCATGAAAAATGGTGAGACAGTGAAAGTGAAAAACCCTAATGGGAATAAAGTTCAGTATGAGAAAAGAAGAGATTTTCCAACTGATAGTAGGAAATACTGTTATACACTTGAGACTGAGGAGAGGAGAAGGTATTTGGTGAGAGCAAGTTTTCAGTATGGGAGTTTGGAAAATGGAGATACATATCCTCAGTTTCAGCTTTATTTGGATGCTACTAAATGGGCTACTGTCTCTATTTATGATGATTCAAGGGTTTATGTTAAGGAAATGATTTTTAGGGCAGCTTTGAATTCTGTTGATGTTTGTGTCTGTTGTGCTACTACTGGTTCTCCTTTTATATCTACTCTTGAGCTTAGGCCTTTGAATCTTTCTATGTATGCTACTGATTTTGAGGATGATTTTTTCTTGAAAGTGGCTGCAAGAATTAATTTTGGTGCTCCAACTGAGGAGCCTGTTAGGTATCCGGAGGATCCATATGATAGAATATGGGAGTCCGATCTTGTAAAAAGACAAAATTATCTTGTTGGAGTAGCAACAGGCACAGAAAGAATTAGCACAACAAGGAACATAGGAATAGAGACAAGAGAATACCCTCCAGTTAAGGTGATGCAAACCGCAGTTGTTGGCACAAAAGGATTGCTTAGTTACAGACTCAACTTAGAAGACTTTCCTGCGAATGCTAGAGCTTATGCTTACTTAGCAGAAATTGAAGATTTGGGTCAGAATGAGACTAGGAAATTCAAATTGGAGCAACCTTATATACCTGACTATAGCAATGCAGTGGTGAACATAGCTGAGAATGCTAATGGTAGCTACACCCTTTATGAACCAAGTTACATGAATGTGAGTCTGGAATTTGTTCTTTCTTTCTCATTTAAGAGGACGCGCGATTCCACTAGAGGGCCTCTACTAAATGCTATGGAAATAAGCAAATATCAAGAAATTGCTTCGAAGACCTTCAAGCAAGATTCAAATTCTGTAAGTGCATTTGCTTCCTTGTCTGATGAAATCATCCCAAAGAACGAAGGGGATCCTTGTGTTCCAACTCCATGGGAGTGGGTGAACTGTAGTACCGCTACCCCTCCAAGAATTACAAAGATAAACTTATCAAGAAGGAATCTGACTGGTGAAATTCCACCAGAGCTCAACAACATGGAAGTCTTGGAAGAATTGTGGTTAGATGGAAACTCGCTTGCAGGAAAATTACCTGACCTGAGCAATCTTATCAATCTAAAGATTGTACATCTAGAGAACAATAAGTTGGACGGTTCACTACCTCCTTACCTCGGTAGCTTGCCAAGTTTACAAGCATTGTACATACAGAATAACTCATTTAACGGGGAAATACCAGCAGGATTATTGTCTTCAAAAATCACTTTCATCTATGAGTATAATCCTGAACTATATAGAAAGAGCAAAAAGCATTTTCAGTTGATAATAGGAGTTTCGATCGGAGTACTAGTGATTCTATTAGTCTTGTTCATAGGGAGTTTGTTGTTATTACATTACCTAAGGAGAAAGGCTTCTCAAAAGAAAAGTGATGAAAAAGCCTTATTGTGCTTAGGTATTCGGGGACGCAGTAAACATTTAACTGGATACTCTTTCGGCCGAGATGGGAATTTAATGGATGAAGGTACTGCATACTATATTAATCTCTCAGATTTGAGAGAAGCTACAGACAATTTTTCAAAGAAAATTGGAAAAGGAAGCTTTGGATCGGTCTATTATGGAAAAATGAAAGACGGAAAAGAGATCGCAGTTAAGACTATGACTGATCCATCAAGCCATGGGAACCATCAATTTGTAACCGAGGTAGCTCTCCTATCGAGAATTCATCACAGAAACTTGGTTCCTCTGATTGGATATTGTGAAGAAGAGTATCAGCATATTCTTGTTTATGAGTATATGCACAATGGCACTCTAAGAGATCACATTCATGAATGTTCGAGTCAGAAGCAATTAGACTGGTTAATTCGGCTTCGAATTGCAGAAGATTCTGCCAAAGGTCTTGAATACTTACACACGGGATGTAATCCTAGTATCATTCATCGAGACGTAAAGACGAGCAACATTCTCCTAGACATCAATATGAGAGCAAAAGTTTCAGATTTTGGACTCTCGAGACTTGCCGAAGAAGATTTAACTCATATATCAAGTGTTGCAAGAGGAACTGTGGGATACCTGGATCCTGAGTACTACGCAAATCAGCAATTGACTGAAAAGAGTGATGTATACAGTTTCGGAGTTGTTCTATTGGAACTGATATCTGGAAAAAAGCCGGTATCACCAGAAGATTATGGTCCAGAAATGAATATAGTTCATTGGGCAAGATCGCTAATTCGCAAAGGGGATATAATCAGCATTATGGATCCTTTGCTAATTGGAAATGTGAAAACTGAATCAATTTGGAGGGTTGCTGAAATAGCCATGCAATGTGTAGAACCACATGGTGCTTCTAGGCCAAGGATGCAAGAAGTGATTTTGGCTATACAAGATGCTTCTAAGATAGAGAAAGGAACAGAAAGTCAACTGAAATTATCACCCTCAGGTGATTCAAAACCACAATCTTCAAGGAAAACTTTGCTTACAAGTTTTCTTGAAATTGAGAGCCCTGATTTGTCTAATGGATGTCTTCCATCAGCAAGATAA 2802 0.3826 MSLFSLFLFTLVFLISYTTSQLQEFISIDCGGTRSNYTDIATGITWISDSEIMKNGETVKVKNPNGNKVQYEKRRDFPTDSRKYCYTLETEERRRYLVRASFQYGSLENGDTYPQFQLYLDATKWATVSIYDDSRVYVKEMIFRAALNSVDVCVCCATTGSPFISTLELRPLNLSMYATDFEDDFFLKVAARINFGAPTEEPVRYPEDPYDRIWESDLVKRQNYLVGVATGTERISTTRNIGIETREYPPVKVMQTAVVGTKGLLSYRLNLEDFPANARAYAYLAEIEDLGQNETRKFKLEQPYIPDYSNAVVNIAENANGSYTLYEPSYMNVSLEFVLSFSFKRTRDSTRGPLLNAMEISKYQEIASKTFKQDSNSVSAFASLSDEIIPKNEGDPCVPTPWEWVNCSTATPPRITKINLSRRNLTGEIPPELNNMEVLEELWLDGNSLAGKLPDLSNLINLKIVHLENNKLDGSLPPYLGSLPSLQALYIQNNSFNGEIPAGLLSSKITFIYEYNPELYRKSKKHFQLIIGVSIGVLVILLVLFIGSLLLLHYLRRKASQKKSDEKALLCLGIRGRSKHLTGYSFGRDGNLMDEGTAYYINLSDLREATDNFSKKIGKGSFGSVYYGKMKDGKEIAVKTMTDPSSHGNHQFVTEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHIHECSSQKQLDWLIRLRIAEDSAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGPEMNIVHWARSLIRKGDIISIMDPLLIGNVKTESIWRVAEIAMQCVEPHGASRPRMQEVILAIQDASKIEKGTESQLKLSPSGDSKPQSSRKTLLTSFLEIESPDLSNGCLPSAR 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02494 933 Pfam Protein tyrosine and serine/threonine kinase 613 878 IPR001245 GO:0004672|GO:0006468
Vifa2g02494 933 SUPERFAMILY Protein kinase-like (PK-like) 597 878 IPR011009 -
Vifa2g02494 933 SMART serkin_6 611 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02494 933 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 409 505 - -
Vifa2g02494 933 Gene3D Ribonuclease Inhibitor 367 518 IPR032675 -
Vifa2g02494 933 SUPERFAMILY L domain-like 396 506 - -
Vifa2g02494 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Vifa2g02494 933 ProSiteProfiles Protein kinase domain profile. 611 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02494 933 PANTHER OS07G0107800 PROTEIN-RELATED 455 883 - -
Vifa2g02494 933 Pfam Malectin-like domain 28 362 IPR024788 -
Vifa2g02494 933 FunFam serine/threonine-protein kinase PBS1-like 588 686 - -
Vifa2g02494 933 Gene3D Phosphorylase Kinase; domain 1 588 686 - -
Vifa2g02494 933 Gene3D Transferase(Phosphotransferase) domain 1 687 900 - -
Vifa2g02494 933 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524
Vifa2g02494 933 MobiDBLite consensus disorder prediction 890 911 - -
Vifa2g02494 933 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 687 894 - -
Vifa2g02494 933 CDD STKc_IRAK 617 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02494 Vifa-Chr2 655528229 655533563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02494 10 933 Receptor kinase-like Gene Family AT1G67720 68.932 0.0 1282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa2g02494 Malectin_like 6.3e-86 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02494 - - gmx:100807148 1531.15