Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02470 ATGACGACAGGTAGACATGGAGATTATCACGATCACAAATTCAGGGATAGTAGTGAGTCTGATTTTGGTATTTCAAGGCGTGGTTTTACTACTAATAATTTTAATGAGGAGTATGATGGGATTAGAAATGGTAAGGTTCGGAGGAGGGATTCGAGAGATAGAATTATTACCAGGGAGAGAGAAATTTCAAATGGTAGTTACCGGTCATCTTCGAGTAGGAGTGACTCTAGCAGTAGTGGCAGGCTTGGTCCTAGAAGATGTGATTTTTCTGTCAAGGCTACGGATAGAGAGCCAGGGGAGCTTTCTAGTGAGAGTGAATCTGATGTTGAAGCGGAGTCACCGGTGAAACACCATAAGGTTGCAATGGGCAAAGAAAATGGGACTCAGTCTCCGTTACAAAGGAAAAGGAAGTTTTCACCAATAGTATGGGATCAAGATGACCACAAAGTCATTAATTTATCCAAGCTTAAGGTTGTCACAACAACAGTGACTGCTGTTGCCCGTCCACCTCCATTTCCAAGAGCAGTCGATGAGTCTCTTGATGTTCCTTACAATGGAGTTGAAGTTCACCCTCCTGAGAATCCCGTGTTGCCAACTGCAATGGATCCTTATATGGTGTCTGAGTCAGTTCAAGATGCCGAATCTGAGTCTCCTATTGGTTTGCATTCACTGTCGTCAGAGCAGAGGTTGGTTAATGGGAACACTGAGCAACCAGAAGTTGAAGATTACGTTTCAACTCGCAATATATCATCTTCTAGATGGGCTTCTGGAGATGGCTCTTCGGATGATGAAGGTGAAATCATTGATGAGAAGGAGATCCTTAAAAAGAGGAGGCTATCTCTTGAGGCAGGTGTGAGAGTACGAAACAAGATGTTGAGACCAGAGGAATATAAAATCGAAGGTTTTGAAAGGTCTAGAGCCAAATCATCCGAATCTGAAGAAAGAGGTAGCACTGGGAGATATTCCGGTGAAGATGATTATCCTGGTATTGAGGCAGGGAAGGACAACTACATGGAGATTGACGGCGGAGTTTGCAAAAGTGACGCAAGTGTTAGTCCCACAAATACTGATTCTGAACCTGAAGACGATTGCAGGGAAAGTATGGAACCTCGGTCCCCACCCCAGAGAGTTGTCAACATGCTTCAGGGGTGTAGAAGTGTCAATGAATTTGAGAGATTGAACAAGATTGATGAAGGAACTTATGGTGTTGTATATAGGGCCAAAGACAAGAAGACCGGTGAAATAGTGGCACTGAAAAAGGTTAAGATGGAGAAGGAAAAAGAAGGCTTTCCACTGACTTCTCTGAGGGAAATAAACATACTTCTTTCCTTTCATCATCCATTCATAGTTGACGTTAAGGAAGTAGTGGTAGGTAGTAGCCTTGATAGTATTTTTATGGTTATGGAATACATGGAACACGATCTTAAAGGACTAATGGAGGCAATGAAGCAGCCATTTAGTCAGAGTGAAGTAAAATGCTTAATGCTCCAGCTGTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCACAGGGACTTGAAGACCTCAAACCTGCTTCTGAATAATAGGGGTGAGTTAAAAATTTGTGATTTCGGATTAGCTCGTCAGTATGGGAGTCCATTGAAACCTTATACATCATTGGTGGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTTTGGGGACAAAGCAGTATTCAACAGCCATTGACATGTGGTCCCTGGGTTGTATAATGGCTGAGCTTTTGTCCAAGGAACCATTGTTTAATGGGAGGACTGAATTTGATCAACTTAACAAGATTTTTAGAATTCTCGGTACCCCAAATGAAACAATTTGGCCTGGGTTCTCAAAATTACCTCTTGTCAAGGCCAATTATGTCAAGCATCAGTATAATCTCCTGCGCAAAAAGTTTCCCGCAACATCATTCACTGGATCCCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTCACTTATGACCCTGAAAAGAGGATCACTGCTGAAGATGCTCTCAACCATGAATGGTTTCGTGAAGTTCCCCTTCCCAAATCTAAAGAATTCATGCCTACATTTCCTGCTCAACATGATAAAGAAAGGAGAATGCGAAGAATAATGAAGAGTCCACACCCGTTAGAGAAGCACCGGAAGGATTTTCAGCTGGGCGAGTCAGGAACTGATTTATTTCAGATAGTTCTTTGGTTATTTTTTAATGTGCATATTGTGTTTGCAAGAGAAAGCTCGTGTAAAGTGGAAGAGTGCATTATGTCCATTTTGTTGAAGAAAATGACACTTTTCACATCAAAGTATCAAAGCTAG 2331 0.4196 MTTGRHGDYHDHKFRDSSESDFGISRRGFTTNNFNEEYDGIRNGKVRRRDSRDRIITREREISNGSYRSSSSRSDSSSSGRLGPRRCDFSVKATDREPGELSSESESDVEAESPVKHHKVAMGKENGTQSPLQRKRKFSPIVWDQDDHKVINLSKLKVVTTTVTAVARPPPFPRAVDESLDVPYNGVEVHPPENPVLPTAMDPYMVSESVQDAESESPIGLHSLSSEQRLVNGNTEQPEVEDYVSTRNISSSRWASGDGSSDDEGEIIDEKEILKKRRLSLEAGVRVRNKMLRPEEYKIEGFERSRAKSSESEERGSTGRYSGEDDYPGIEAGKDNYMEIDGGVCKSDASVSPTNTDSEPEDDCRESMEPRSPPQRVVNMLQGCRSVNEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPFIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTSLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGRTEFDQLNKIFRILGTPNETIWPGFSKLPLVKANYVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEDALNHEWFREVPLPKSKEFMPTFPAQHDKERRMRRIMKSPHPLEKHRKDFQLGESGTDLFQIVLWLFFNVHIVFARESSCKVEECIMSILLKKMTLFTSKYQS 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02470 776 Gene3D Transferase(Phosphotransferase) domain 1 473 714 - -
Vifa2g02470 776 ProSiteProfiles Protein kinase domain profile. 390 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02470 776 MobiDBLite consensus disorder prediction 23 38 - -
Vifa2g02470 776 CDD STKc_CDC2L1 384 681 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vifa2g02470 776 FunFam Cyclin-dependent kinase G-2 473 712 - -
Vifa2g02470 776 MobiDBLite consensus disorder prediction 224 267 - -
Vifa2g02470 776 MobiDBLite consensus disorder prediction 301 374 - -
Vifa2g02470 776 SMART serkin_6 390 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02470 776 PANTHER CELL DIVISION PROTEIN KINASE 388 687 - -
Vifa2g02470 776 Pfam Protein kinase domain 390 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02470 776 MobiDBLite consensus disorder prediction 88 123 - -
Vifa2g02470 776 MobiDBLite consensus disorder prediction 301 332 - -
Vifa2g02470 776 MobiDBLite consensus disorder prediction 224 258 - -
Vifa2g02470 776 SUPERFAMILY Protein kinase-like (PK-like) 382 687 IPR011009 -
Vifa2g02470 776 Gene3D Phosphorylase Kinase; domain 1 375 472 - -
Vifa2g02470 776 FunFam cyclin-dependent kinase G-2 isoform X1 375 472 - -
Vifa2g02470 776 MobiDBLite consensus disorder prediction 1 22 - -
Vifa2g02470 776 MobiDBLite consensus disorder prediction 1 135 - -
Vifa2g02470 776 MobiDBLite consensus disorder prediction 62 83 - -
Vifa2g02470 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Vifa2g02470 776 MobiDBLite consensus disorder prediction 40 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02470 Vifa-Chr2 646053125 646057743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02470 381 708 Core Cell Cycle Gene Families AT5G10270 46.356 8.11e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vifa2g02470 Pkinase 3.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02470 K08818 - gmx:100793729 932.554