Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02466 ATGGTGGTGATGGTGAATTCTGGTTCAGCCTTGAGGAAACAGGTTTTTCCGATTGATTTCGAAACTGAAATGTCACAGCTTCTTGTAGATGCTGCTCATCATGGTCACACAGATACTGCCATGGAATGTGTAGCCATGAATTCATCCGTGGATGTTAACTTTATTGGAACCGTCATGTTGAAGTCCAAAACTACTGAGATTGAGCTTCATGATGACTCGCCTCATCGAGTTAACTCGGTTTATCAGGAGTTCAAAACTGAAGTTACTGCTCTGTTTTTGGCTGCACATTCCGGAAACTTGACTCTCCTTCGTAAGCTAATGAATGTGGGAGGTAATGTGAATGAGAGATTGTTCCGTGGCTATGCTACAACGGCAGCGGTGAGGGAAGGTCACCTTAATGTATTGGAGGTTCTTATCAATGGTGGAGCTTCACAGCTTGCATGTGAAGAGGCTTTACTTGAATCAAGCTATGTGGGAAGGGCTAGATTTGCTGAGCTCCTTATGCAGTCCAATATGATCCGTCCTCACGTTGCAGTTCACGCCCTTGTCTCGGCTTGTTGCAGAGGATTCGTTGAGGTTGTTGATGTACTCATCAAGCAAGGAGTGGATATCAATGCAATCGATAGAATTTTGCTTCAATCTTCAAAGCCATTTCTTCACACTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATAAATGTTGTTAAACTCCTTTTGCAGGTTGGTGTAAGACTTGATATCAAGGTCAAATTAGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAATTCCGTGTTGGTGTCGGACTAGCCGAGCCTTTTCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACTGGCACTATACTCAACATGCTTCTCCATCACCTCTCACCTAATAGTTTTCACATGGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTGAATGTACTTCTGAATAATGGGGTTGATACAGAATTGGCCCTTCAAACTACTGAAGAAGAAACCAATCTATACCCTATTCACATGGCTGCACGCCTCGGACTATGCAACATTCTTCAATGTTTGATTAATGGTAACTGTAACTTGGACTCGCAAACAAAACTTGGTGACACGGCGTTGATGGTTTGCACAAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCGTTTGGTCATTGCGCAACTTCAACAGCAACTTCTATTCATTGGACTAAAGAATATCAGAAAGCAGTTTTAGATATAATTAGAGCCGGAAAGGTTGTTAAGTCTAGCAATGCGTCTAGATTTTCATCTTTGTTATTCGTCACTCACGCGAATGACATAGAGGCTTTGAAAAAAGTCGTTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGAGTGGATTTTCAGCTGTCATGATATCTGCTTCAGAGGGTAGCGTGGAGGCATTCAAGTTGCTTCTTCACGCTGGAGCTGATGTAACCAATCTTAAAAACAAAGATGGTTTAACAGCTCTAGATATCATAGATTTGAAACAAAATGGTGAAGACGGTCATAAGGTGATGTTTGAATATGCACTTAAAAAGGGATGTTTGAATATTAGTACTTTAGCGGAAGCGAATACTCTTCACCGTGCAGCTTGTTATGGAGATATAAACATAGTTGAAAAACTACTAAAGGAAGGGAATTATGATGTGAATGGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCCAGAGAAAGTAATGGAGAAACGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAAAATGAAAGACATGAAACAGCACTTTTACTTGCAAGAGAAAAAAAATTGAAAGGAAATGATGCAGAGAATGTGATCATGGATGAGTTAGCTAGAATAGTAGTATTGTGCGGTGCGCGTGTGAAGAAACATACAAAATGTGGTAAAGGGTTACCACATAGGAAACAACTGGTAATGGTTGGTGCTGCTGGAATCTTACGTTGGGGGAAATCGAATAAGAGAAACGTTGTTTGTAAAGGGGCTGAGGTTGGACCAAGTGAAAGATTTCGATGGAACCGTAGGAAGAAGTTTGATGTTGATGAGGTGGGAATGTTTCATGTTGTTACAACAAAGAATAAGGAGGTGCATTTTGTTTGTGAAGGAGGGGTTGAAATGGCTGAGTTGTGGGTAAGAGGGATTAGATTAGTAACAAGAGAAGCCATTTTTGGTTCTTAG 2292 0.4049 MVVMVNSGSALRKQVFPIDFETEMSQLLVDAAHHGHTDTAMECVAMNSSVDVNFIGTVMLKSKTTEIELHDDSPHRVNSVYQEFKTEVTALFLAAHSGNLTLLRKLMNVGGNVNERLFRGYATTAAVREGHLNVLEVLINGGASQLACEEALLESSYVGRARFAELLMQSNMIRPHVAVHALVSACCRGFVEVVDVLIKQGVDINAIDRILLQSSKPFLHTNVDCNALFAAVVSRQINVVKLLLQVGVRLDIKVKLGAWSWETDTGEEFRVGVGLAEPFPITWCAVEYFESTGTILNMLLHHLSPNSFHMGRTLLHHTIICNNERALNVLLNNGVDTELALQTTEEETNLYPIHMAARLGLCNILQCLINGNCNLDSQTKLGDTALMVCTRYKHEKCLRVLVSSGADLGIVNSFGHCATSTATSIHWTKEYQKAVLDIIRAGKVVKSSNASRFSSLLFVTHANDIEALKKVVENRNINLDEQNESGFSAVMISASEGSVEAFKLLLHAGADVTNLKNKDGLTALDIIDLKQNGEDGHKVMFEYALKKGCLNISTLAEANTLHRAACYGDINIVEKLLKEGNYDVNGFDENGYTPLMLAARESNGETCGLLISHGAKCDIKNERHETALLLAREKKLKGNDAENVIMDELARIVVLCGARVKKHTKCGKGLPHRKQLVMVGAAGILRWGKSNKRNVVCKGAEVGPSERFRWNRRKKFDVDEVGMFHVVTTKNKEVHFVCEGGVEMAELWVRGIRLVTREAIFGS 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02466 763 ProSiteProfiles Ankyrin repeat region circular profile. 590 622 - -
Vifa2g02466 763 ProSiteProfiles Ankyrin repeat profile. 181 209 IPR002110 GO:0005515
Vifa2g02466 763 ProSiteProfiles Ankyrin repeat profile. 590 622 IPR002110 GO:0005515
Vifa2g02466 763 ProSiteProfiles Ankyrin repeat profile. 485 517 IPR002110 GO:0005515
Vifa2g02466 763 SUPERFAMILY Ankyrin repeat 27 257 IPR036770 -
Vifa2g02466 763 Gene3D - 428 532 IPR036770 -
Vifa2g02466 763 Gene3D - 12 156 IPR036770 -
Vifa2g02466 763 Gene3D - 162 263 IPR036770 -
Vifa2g02466 763 Pfam Ankyrin repeats (3 copies) 540 621 IPR002110 GO:0005515
Vifa2g02466 763 Pfam Ankyrin repeats (3 copies) 328 410 IPR002110 GO:0005515
Vifa2g02466 763 PANTHER ANKYRIN REPEAT-CONTAINING 22 749 - -
Vifa2g02466 763 Gene3D - 295 427 IPR036770 -
Vifa2g02466 763 Coils Coil 465 485 - -
Vifa2g02466 763 ProSiteProfiles Ankyrin repeat region circular profile. 485 512 - -
Vifa2g02466 763 ProSiteProfiles Ankyrin repeat profile. 381 413 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 223 252 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 485 514 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 381 410 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 86 115 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 310 339 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 348 377 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 177 206 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 118 147 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 556 586 IPR002110 GO:0005515
Vifa2g02466 763 SMART ANK_2a 590 619 IPR002110 GO:0005515
Vifa2g02466 763 Gene3D - 533 639 IPR036770 -
Vifa2g02466 763 SUPERFAMILY Ankyrin repeat 309 632 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02466 Vifa-Chr2 645932602 645935192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02466 455 613 Ion Channels AT2G25600 30.108 2.64e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02466 - - mtr:11444172 1264.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02466 2 645932602 645935192 Vifa2g02466 2 645932602 645935192 ECH