Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02464 ATGGATGTTTCTGAGGTTGAAGAAAGTTTCTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGACGTCTATCTGCGATATATTGTAAAATATTGTCCCTTTTTCCGGCCTTAGAGGCAGCTAAGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTACATGTAGCTTTAGAGAAGGCGAAGAATGTACTTCAGCATTGCTCGGAGTCTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTGTAAAATTTGAGAAGGCCAAGTGTGCTCTTGTAGATAGTCTTAAGCTAGTGGAAGATATTGTTTCCCAAGCCATTGGCTGTCAGATTGATGAAATTGTAAACGAAATTGCTGGTATAGTGTTTGCGCTTGATCCATCAGAGAAGCAAGTTGGGGATGACTTAATTGCATTGCTCCAGCAGGGTAGAAAGTTTAGCGACTCTAATAACAGTACTGAACTTGAGTGTTTTCATATGGCTGCTACTAGACTTGGAATCACATCTTCCAGAGCAGCTCTTACTGAAAGAAGAGCTCTGAAAAAGCTCATTGAAAGGGCTCGGGCCGAGGAAGACAAAAGAAAAGAATCAATTATTGCGTATCTTCTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAATGAGTTCTCTGACGATAATGATTCTCAACCTTGTTCTCCCACTGTCCATATACCTCTTGAGAATGTTGTTCCTGGTAGTCATTGTCAAGCCTTTGATAGACAAATATCAAGACTTGGTTCCTTTAATATTAATCCAAACAATAAGAAATCGGGACAGATGCTCCTTCCACCAGAAGAGTTAAGGTGTCCAATCTCTCTGCAACTTATGAGCGATCCTGTTATAATTGCTTCTGGGCAGACTTATGAAAGAGCTTGTATAGAAAAATGGTTCAATGATGGTCACAACACCTGTCCAAAGACTCAACAGAAGCTTGCACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTCGTGGCTAGTTGGTGTGAACAGAATAGAATTCCTGTTCCCGAAGGCCCTCCAGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATTCCGATTCCACAAATTCTAGATCCGTAAATAGTGTCAACTCTTGCAAATTGAAGGGTGTCAAAGTTGTTCCTCTTGAAGAGAATGTTATCTTAGAGCAAACCGAGGGAAATGTAGCTGAAAGCTTGCCGGCACAAGAAGAGGAAGACAGTGAGAAGTATCTTAGTTACGTGAAAGTATTGACCAAAGGGAACAATTGGAAGAGAAAGAGTAAAATAGTAGAGCGGTTAAGGATTTTGTTGCGGGATGATGAGGAAGCTAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTTCAGTATCTGCAATCAGCTGTGCGCGAAGGGAATGCGGTAGCTCAGGAAAATGGAGCCATGGCTCTGTTCAACCTGGCCGTGAATAACAACAGAAACAAGGAACTTATGATATCAGCAGGAATCATATCGTTGTTGGAGGAAATGATTTCAAACACCAGTTTGTACGGTTGTGCAACCGCACTTTATTTGAACCTTTCTTGCCTTGAAGAAGCCAAGCAAATGATTGGTACGTGTCAGGCCGTGCAGTTCCTTATCCAGATGCTTCAAACTAAAACGGAAGTCCAGTGCAAGCTAGATGCCCTCCATGCACTCTTTAATATTTCTACCGTACCCTCAAATATTCCAAACCTTCTTTCATCTGGCATCATCAATGGCCTACAATCTATTCTTGTAGGCCAGACCGATTGCACGTGGACAGAAAAATGCATAGCTGTTTTGGTTAATTTGGCCATTTCTCAAGCTGGAAGAGAGGAAATGATCTTGAATCCTGAACTCATAAGCACATTGGCTTCTATACTTGATACCGGTGAATCCCTTGAGCAGGAACAAGCTGTGTCTTGTCTTCTAATATTATGCAACAGGAGTGAGAAATGTTGTGAGATGGTCTTGCAAGAAGGCGCTATACCTGCATTGGTTTCAATATCGGTAAATGGAACCTCAAGAGGAAGAGAGAAATCTCAGAAACTCTTGATGCTCTTCCGAGAGCAGCGACAGCGAGATCATTCACCTGCTGAGACTCAACTCTGCTCACCTGAAGTTGGTGATTTGTCCATGCCTCCTCAAGAAGCGAAACCGCTATGTAAATCAATATCTAGAAGAAAAGTTGGGAAAGCTTTAAGTTTTCTATGGAAAAGCAAGAGCTATTCTGTATACCAGTGTTAG 2289 0.4142 MDVSEVEESFFAASDAKLHGEMCRRLSAIYCKILSLFPALEAAKPRSKSGIQALCSLHVALEKAKNVLQHCSESSKLYLAITGDSVLVKFEKAKCALVDSLKLVEDIVSQAIGCQIDEIVNEIAGIVFALDPSEKQVGDDLIALLQQGRKFSDSNNSTELECFHMAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRNEFSDDNDSQPCSPTVHIPLENVVPGSHCQAFDRQISRLGSFNINPNNKKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFNDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNRIPVPEGPPESLDFNYWRLALSDSDSTNSRSVNSVNSCKLKGVKVVPLEENVILEQTEGNVAESLPAQEEEDSEKYLSYVKVLTKGNNWKRKSKIVERLRILLRDDEEARIFMGANGFVEALFQYLQSAVREGNAVAQENGAMALFNLAVNNNRNKELMISAGIISLLEEMISNTSLYGCATALYLNLSCLEEAKQMIGTCQAVQFLIQMLQTKTEVQCKLDALHALFNISTVPSNIPNLLSSGIINGLQSILVGQTDCTWTEKCIAVLVNLAISQAGREEMILNPELISTLASILDTGESLEQEQAVSCLLILCNRSEKCCEMVLQEGAIPALVSISVNGTSRGREKSQKLLMLFREQRQRDHSPAETQLCSPEVGDLSMPPQEAKPLCKSISRRKVGKALSFLWKSKSYSVYQC 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02464 762 SMART arm_5 537 578 IPR000225 GO:0005515
Vifa2g02464 762 SMART arm_5 498 536 IPR000225 GO:0005515
Vifa2g02464 762 SMART arm_5 452 496 IPR000225 GO:0005515
Vifa2g02464 762 FunFam RING-type E3 ubiquitin transferase 275 349 - -
Vifa2g02464 762 Gene3D - 403 715 IPR011989 -
Vifa2g02464 762 Pfam U-box domain 277 347 IPR003613 GO:0004842|GO:0016567
Vifa2g02464 762 Coils Coil 175 195 - -
Vifa2g02464 762 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 509 IPR000225 GO:0005515
Vifa2g02464 762 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Vifa2g02464 762 Gene3D - 9 105 IPR036537 GO:0007166
Vifa2g02464 762 PANTHER U BOX DOMAIN-CONTAINING 23 706 - -
Vifa2g02464 762 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Vifa2g02464 762 SUPERFAMILY ARM repeat 415 701 IPR016024 -
Vifa2g02464 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 349 IPR013083 -
Vifa2g02464 762 SUPERFAMILY RING/U-box 272 351 - -
Vifa2g02464 762 CDD RING-Ubox_PUB 277 329 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02464 Vifa-Chr2 645115098 645118194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02464 1 761 U-box Gene Family AT1G24330 65.083 0.0 997
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02464 - - gmx:100804344 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02464 2 645115098 645118194 Vifa2g02464 2 645115098 645118194 ECH
Vifa2g02464 2 645115098 645118194 Vifa2g02464 2 645115098 645118194 PCT