Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02456 ATGGTGAAGTACTCCCAAGAGGCCGACAATGCCACCAAATCAACCAAGGCCAGAGGCGCCGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACCGCGTTTGCCATCAGGAAGACAGCCCAAGCCAAGAACAGGCATTCCAATGGGCAAGGACGTTGGCCTGCCAAGTCTGCTAAGTTTATTCTTGATTTGCTCAAGAATGCTGAGAGTAACGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTCTATGTTTCTCATATTCAGGTCAATCAAGCTCAAAAGCAAAGACGTCGTACTTACAGGGCTCATGGAAGAATCAATCCCTACATGTCATCTCCATGCCACATTGAGCTCATTTTATCTGAAAAGGAAGAGGCTGTCCAGAAAGAGGTATAG 396 0.4672 MVKYSQEADNATKSTKARGADLRVHFKNTRETAFAIRKTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEV 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02456 131 CDD Ribosomal_L22 16 120 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vifa2g02456 131 Pfam Ribosomal protein L22p/L17e 17 121 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vifa2g02456 131 ProSitePatterns Ribosomal protein L22 signature. 96 120 IPR018260 GO:0003735|GO:0005840|GO:0006412
Vifa2g02456 131 NCBIfam 50S ribosomal protein L22 39 123 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vifa2g02456 131 Gene3D Ribosomal protein L22/L17 41 126 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vifa2g02456 131 Gene3D Ribosomal protein L22/L17 1 40 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vifa2g02456 131 PANTHER 60S RIBOSOMAL PROTEIN L17 1 38 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vifa2g02456 131 SUPERFAMILY Ribosomal protein L22 1 123 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02456 Vifa-Chr2 643641279 643642429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02456 1 130 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 73.292 4.66e-81 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02456 K02880 - gmx:100305777 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02456 2 643641279 643642429 Vifa2g02456 2 643641279 643642429 ECH
Vifa2g02456 2 643641279 643642429 Vifa2g02456 2 643641279 643642429 PCT