Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02450 ATGGCGGAGGAAGAAGAGAATGAGTTATCGAGCGAACCGGAGTTTCCGAAGAGTCGAGTGAAGAAGATAATGACACTGGACAAAGACGTAAAGAGAGTGAGTTCAGAAGCGTTGTTTCTGGTGTCGCGATCTACAGAGCTGTTTTTGCAGTTACTTGCTGAAAAGTCTGCGGAAGCTGCAATTGAGAAGAAAAGGAAGACGGTGAAGCTTGAACATATAAGAATCGCGGTGAAGAGGAATCAGCATGGAAAGTCTGTTCCGGTTGGTACTCGCCGCATTGATCATATATTTCGAAAGTCGGAAGCTCAGGATGATGCCGAGGCGCCTGAACCCATGGAAGAGTCATAG 348 0.4684 MAEEEENELSSEPEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQLLAEKSAEAAIEKKRKTVKLEHIRIAVKRNQHGKSVPVGTRRIDHIFRKSEAQDDAEAPEPMEES 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02450 115 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 81 - -
Vifa2g02450 115 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 77 IPR003958 -
Vifa2g02450 115 Gene3D Histone, subunit A 1 84 IPR009072 GO:0046982
Vifa2g02450 115 SUPERFAMILY Histone-fold 11 80 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02450 5 106 CCAAT-HAP5 Transcription Factor Family AT5G43250 50.781 3.54e-34 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vifa2g02450 CBFD_NFYB_HMF 2.9e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02450 - - vun:114164970 127.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02450 2 642136691 642137122 Vifa2g02450 2 642136691 642137122 ECH