Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02437 ATGGAGTGGAATGCGAAATCGCCTGGGCAATGGGACTGGGAAAACTTGTTCTTCGTGAATTCAAAACCAACAGAAAATCACAAGTCTCAGTCTACTGATTGGAGTGCGGAGACAGATCGAGAAATCAACGTCGGAATGTTGTTTCCATCAAGTGGTAGTGGCTGTTCCGCGTCTAAACTGTTACACGCGTCGTCCTCAAGGAGCTCAAAATCTGCTTCCAATAATTCATCGTCAAACGGGGAGAGCAAGACATCTATGTTAACTCGGGAATGTTCTCAAGACGATTCCACCGGTAAGAAAGAATTGTCTAAAGGAGATCCAATTGAAACTTCTCAAGCAGCAGAACCGTTGCTCACACTGAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTCCACTGGAAGCCACTCCAAGAAAGCCTCTTCCTCCGCGGTTCCTGCAGCTCCTCCTTCGAGTGGAAAGAAAGGTAAATCGGGTTGTCAGAACTTGCTACATTGCTGCCAGGTAGAAGGTTGTGGCCTCGACCTCTCTTCCTCTAAAGATTACCATCGAAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGTATGGAGCGTCGATTTTGCCAACAATGCAGCAGGTTCCATTCCCTATCGGAGTTTGACGAGAAAAAAAGAAGCTGCAGACGTCGTCTTTCAGATCACAATGCAAGACGCCGCAAACCTCAACCTGGAGCAATGCAATTGAATCCATCAGCTCTTTCTTCATCACCCTATGATCAAAGACAACCAATGGGCCCATTTGCTTTTCCAAGGAACACTGCAAATTTAGCATGGCAAGGCATACATAACAGCAAACTCCCGGAAACACAAGATTTTATGCTGAAACCTCCAAAAGCATTTAACAAGACTGTCACTATGTTTTCCGATGATTCCAAAGGCATAGAATCCAGGAGTGCATTTCCAGGTATAGAAGATCCGACTACCTTGTCTGATCCAAATGCTACTCAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATACGATACCAAGTCCCTCTCTTTAGAACACTCGAATCGGCCAACCGGGGCAACTCATTCAGTAACACATGCACCTGCTAACCGCTCACCCTTTCCGTCAACAGAATACTGGCACACTGATCTGCAACAGGCCAACAACTCCAGCGCTTGTATCTCGTTCTCAGGTTACGACAATAGCAACCGCTTTCAAGACTTTCAGCTGTTCAGCGCGCCGTTCGAGTCGAGTTTCCCTTGCAACCAGATGGATTAA 1305 0.4598 MEWNAKSPGQWDWENLFFVNSKPTENHKSQSTDWSAETDREINVGMLFPSSGSGCSASKLLHASSSRSSKSASNNSSSNGESKTSMLTRECSQDDSTGKKELSKGDPIETSQAAEPLLTLKLGKRFYFEDVSTGSHSKKASSSAVPAAPPSSGKKGKSGCQNLLHCCQVEGCGLDLSSSKDYHRKHRVCESHSKSPKVVIAGMERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQPGAMQLNPSALSSSPYDQRQPMGPFAFPRNTANLAWQGIHNSKLPETQDFMLKPPKAFNKTVTMFSDDSKGIESRSAFPGIEDPTTLSDPNATQDVNRALSLLSTNSWGAYDTKSLSLEHSNRPTGATHSVTHAPANRSPFPSTEYWHTDLQQANNSSACISFSGYDNSNRFQDFQLFSAPFESSFPCNQMD 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02437 434 MobiDBLite consensus disorder prediction 313 333 - -
Vifa2g02437 434 Gene3D - 163 228 IPR036893 GO:0003677|GO:0005634
Vifa2g02437 434 Pfam SBP domain 167 240 IPR004333 GO:0003677
Vifa2g02437 434 SUPERFAMILY SBT domain 165 246 IPR036893 GO:0003677|GO:0005634
Vifa2g02437 434 ProSiteProfiles Zinc finger SBP-type profile. 164 241 IPR004333 GO:0003677
Vifa2g02437 434 MobiDBLite consensus disorder prediction 135 155 - -
Vifa2g02437 434 MobiDBLite consensus disorder prediction 361 385 - -
Vifa2g02437 434 MobiDBLite consensus disorder prediction 49 92 - -
Vifa2g02437 434 MobiDBLite consensus disorder prediction 225 261 - -
Vifa2g02437 434 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 382 IPR044817 GO:0003677
Vifa2g02437 434 MobiDBLite consensus disorder prediction 45 111 - -
Vifa2g02437 434 FunFam Squamosa promoter-binding-like protein 14 158 228 - -
Vifa2g02437 434 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02437 Vifa-Chr2 635778370 635779928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02437 1 392 SBP-box Gene Family AT5G43270 38.480 5.37e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa2g02437 SBP 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02437 - - mtr:11441057 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02437 2 635778370 635779928 Vifa2g02437 2 635778370 635779928 ECH