Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02435 ATGAGTTTTCTCCATGTAATTGGGTTTGGTCTAAAAGTGGGGCATCTGCTTTTAGTGCTATGTTGCTGGATTGTATCTATCATTTATATCAATTGGTTTATTAGTATGGATAAAAAGATGGGTTTTTTAGGAGATGGTGGCAAGATGTGGCTTAAATGGTGGGAGAAGATCTTGGGGATTACTGAGAAGAGGAAAGAGACTCTTGCTAGTATGTGTGATGAAAGAGCTAGGATGCTTCAAGATCAGTTTAATGTTAGTATGAATCATATTCAAGCCATGTCGATCTTGATCTCGACTTTCCATCATGCTAAGAATCCTTCTGCTATTGACCAGAGAACGTTTGCGAAGTATACAGAAAGAACGGCTTTTGAGAGGCCGCTTACAAGTGGTGTTGCGTATGCTGTAAGGGTGCTTCAATCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGAGTATTAAGAGGATGGATACGATGGAGCAGAACCCGGTTCATGAGGATGATTATGTACCGGATGAATTGGAACGATCGCCTATCCATGAAGAATATGCTCCTGTCATTTTTGCACAAGATACAATTTCACATGTCATATCTATTGATGTGCTTTCAGGAAAGGAAGACCGTGAAAATGTGTTGCGTGCGAGAGAATCAGGCAAAGGAGTTTTAACTGCTCCTTTCAGGCTGTTGAAAACAAACCGTCTAGGTGTTATCCTCACGTTTGCGGTCTACAGGAGAGATCTCCCGTCAAATGCTACTCCAAATGAAAGGATTCAAGCCACTGATGGGTATCTCGGCGGGGTGTTTGAAATAGAATCGTTAGTCGAGAAATTGCTTCAGCAACTTGCTAGTAAGCAAACAGTGATCGTTAGTGTATATGATACAACAAACCATACACATTCTATTCCCATGTATGGTTCTGATGTATCGGGCGATGAGTTCTATCACGTGAGCTTTCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAACCTCCATGGCCGTGGTTGGCATTAAGTACATCGTTTGGCATCCTTGTAATTGCACTCCTTGTTGGACATATATGTCATGCAACTGTGAATCGAATTGCCACCATAGAGGAGGATTGCCGTAAGATGAAGGAGCTGAAAAAGCTAGCTGAGGCAGCTGATGTTGCTAAATCTCAGTTCCTTGCTACTGTTTCGCACGAGATCAGAACTCCGATGAACGGTGTTTTAGGGATGATGAATATGATCATGGACACCGATCTCGATGTAACACAACAGGAATATGTCAGAACTGCACAAGGCAGTGGAAAAGCTCTAGTGTCAATTATAAATGAACTTTTGGACCAGGCGAAGATTGATTCTGGTAAGCTAGAGCTCGACGCTCTGATGTTCGATATACGAGCTATCATGGATGATGTGTTGTCCCTATTTTCGGAAAAATCTCAAGGAAAAGGAGTAGAGTTAGCAGTTTACGTCTCGGATCAGGTTCCTCAACAGCTTATAGGTGATCCAGGAAGGTTTCGACAAATAATCACGAATCTCATGGGTAACTCAGTTAAGTTCACGGACAAAGGACATATCTTTGTCACTATCCATCTTGTTGAGGAGGTTTTCCATTCAATAGAAGTTGAGCGAGAATCAAGTAAAGAAACAGATGATACATTAAGTGGTTTCCCGGTGGCTGATGGTCGGCGAAGCTGGGAAGGATTCAAAGCTTTCAGTCACGAGGGACCTCTTGGCTCTTTCTCATCCCCCTCCTCCACTGATCTCATCAATGTGATTGTATCGGTTGAGGATACGGGTGAAGGTATTCCTCTAGAGTCTCAGGAGAAGATATTCACTCCATTCATGCAGGGAGAAATCGGATTCGCGAGTGAACCGGGCATTGGAAGCACTTTCACGTTTACGGCTGGTTTCACCAATGCATGTCCTGATTCAAATGAAATTAAAACTCAGAAAATCAGCAACCAACCTCATCCTGCATCCTCGGAGTTTAACGGTATGGCTGCACTAGTTATTGATCCGAGACCTGTTCGAGCTAAAGTGTCGAGATATCACATCCAACGCCTTGGAATTCACGTTGAAACAAAATTAGATTTGAAGCAAGGTTTGTCCACCGTAACCGATGGAAATGTAGCTATCAATATGGTCCTTATTGAACAAGAGGTTTGGGAAAGAGACACGAGCATTTCATCGCAATTTGTGAATAACATTAGGAAAATCGTTGAAGTTGATAAAGAGATTCCTCCAAAACTATTTATTCTTGTTAATTCTACTAGTTCTTTTAGAGCAAGTTCTTCTGTGACTTCATGTGTTCATAATCCAACAGTCGTCACAAAACCTTTGAGAGCAAGTATGTTAGCGGCTTCACTACAAAGAGCTATTATGGGAGTTGGGAACAAAGGGAATCCTCGAAATGGAGAACATCAGGGTTTGTCTCTTCACCATCTTCTCTCGGGGAGAAAGATTCTTATTGTAGATGATAATAGTGTGAACCGTACCGTAGCCGCTGGTGCTTTGAAAAAATATGGAGCTGGTGTGGTTTGTGTAAGCAGCGGAAAAGAAGCCATCTCTATGTTGAAACCGCCTCATCAGTTTGATGCATGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCTACGCAGCGAATTCGAAAGATTGAAAACAACGTGAGCAACCAAGAATTGTATGTCCATCTACCGATTTTGGCTATGACAGCAGACGTGATGCAGGCTACACAAGAGGAATGCTTAAAGTATGGGATGGATGGATATGTTTCAAAACCATTTGAAGCGGAACAACTTTATAGAGAGGTTTCAAAGTTTCTCCAATCATCATGA 2856 0.4223 MSFLHVIGFGLKVGHLLLVLCCWIVSIIYINWFISMDKKMGFLGDGGKMWLKWWEKILGITEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFAKYTERTAFERPLTSGVAYAVRVLQSEREQFEKQQGWSIKRMDTMEQNPVHEDDYVPDELERSPIHEEYAPVIFAQDTISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYRRDLPSNATPNERIQATDGYLGGVFEIESLVEKLLQQLASKQTVIVSVYDTTNHTHSIPMYGSDVSGDEFYHVSFLNFGDPFRKHEMHCRFKQKPPWPWLALSTSFGILVIALLVGHICHATVNRIATIEEDCRKMKELKKLAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMIMDTDLDVTQQEYVRTAQGSGKALVSIINELLDQAKIDSGKLELDALMFDIRAIMDDVLSLFSEKSQGKGVELAVYVSDQVPQQLIGDPGRFRQIITNLMGNSVKFTDKGHIFVTIHLVEEVFHSIEVERESSKETDDTLSGFPVADGRRSWEGFKAFSHEGPLGSFSSPSSTDLINVIVSVEDTGEGIPLESQEKIFTPFMQGEIGFASEPGIGSTFTFTAGFTNACPDSNEIKTQKISNQPHPASSEFNGMAALVIDPRPVRAKVSRYHIQRLGIHVETKLDLKQGLSTVTDGNVAINMVLIEQEVWERDTSISSQFVNNIRKIVEVDKEIPPKLFILVNSTSSFRASSSVTSCVHNPTVVTKPLRASMLAASLQRAIMGVGNKGNPRNGEHQGLSLHHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGKEAISMLKPPHQFDACFMDIQMPEMDGFEATQRIRKIENNVSNQELYVHLPILAMTADVMQATQEECLKYGMDGYVSKPFEAEQLYREVSKFLQSS 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02435 951 Pfam His Kinase A (phospho-acceptor) domain 392 457 IPR003661 GO:0000155|GO:0007165
Vifa2g02435 951 SMART HKATPase_4 504 643 IPR003594 -
Vifa2g02435 951 CDD REC_hyHK_CKI1_RcsC-like 825 944 - -
Vifa2g02435 951 Gene3D - 360 455 - -
Vifa2g02435 951 SMART CHASE_2 105 306 IPR006189 -
Vifa2g02435 951 PANTHER TWO-COMPONENT HISTIDINE KINASE 71 941 - -
Vifa2g02435 951 ProSiteProfiles Histidine kinase domain profile. 399 632 IPR005467 -
Vifa2g02435 951 Gene3D - 456 622 IPR036890 -
Vifa2g02435 951 FunFam Histidine kinase 4 109 338 - -
Vifa2g02435 951 Gene3D - 808 949 - -
Vifa2g02435 951 ProSiteProfiles Response regulatory domain profile. 824 948 IPR001789 GO:0000160
Vifa2g02435 951 Gene3D - 59 108 - -
Vifa2g02435 951 CDD PRTases_typeI 776 852 IPR000836 -
Vifa2g02435 951 Pfam CHASE domain 108 304 IPR006189 -
Vifa2g02435 951 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 381 458 IPR036097 GO:0000155|GO:0007165
Vifa2g02435 951 FunFam Histidine kinase 4 364 455 - -
Vifa2g02435 951 Gene3D CHASE domain 109 338 IPR042240 -
Vifa2g02435 951 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 504 620 IPR003594 -
Vifa2g02435 951 CDD HisKA 392 453 IPR003661 GO:0000155|GO:0007165
Vifa2g02435 951 ProSiteProfiles CHASE domain profile. 105 331 IPR006189 -
Vifa2g02435 951 SUPERFAMILY CheY-like 821 948 IPR011006 -
Vifa2g02435 951 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 446 638 IPR036890 -
Vifa2g02435 951 ProSiteProfiles Response regulatory domain profile. 671 797 IPR001789 GO:0000160
Vifa2g02435 951 Pfam Response regulator receiver domain 825 943 IPR001789 GO:0000160
Vifa2g02435 951 Coils Coil 369 389 - -
Vifa2g02435 951 SMART REC_2 823 944 IPR001789 GO:0000160
Vifa2g02435 951 SMART HisKA_10 392 457 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02435 Vifa-Chr2 633631491 633635637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02435 1 950 Miscellaneous Gene Families AT1G27320 61.633 0.0 1243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g02435 CHASE 2.4e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02435 K14489 - gmx:100801546 1463.74