Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02430 ATGCTACCTGGTTTGCAATACAATATCGATGATTTGTTTCAAGAAGCTAAGAAAAGATGGCTCAAGCCTATAGAAGTGTTTTACATTTTGCAGAATCACGATGTGTGCAAGTTCACCGAAGTTCCTGTTAACCAGCCACGCGATGGATCGGTGCATCTGTTTAATAAAAGAGTCATGCGTTTCTTTCGGAAAGATGGTCATAATTGGCGGAAGAAAAAAGATGGAAGAACTGTGGCAGAAGGACATGAACGGCTTAAGGTTGGAAATGTTGAAGCCCTAAACTGTTACTATGCACATGGAGCAGAGAACCGTAGTTTCCAGAGGCGAAGTTATTGGATGTTGAACCCGGAATATGAACACGTTGTTCTTGTGCATTACAGAGAAACAAATGAGGGGACACCCAATTCTAGTCCTGTCACACAATTGTCAACATTTAGTCACAGTCATAGGTCATATACTCCTCAAAACCCTGAGACAACATCAATAGCAGATGCACAAGCTTTGCGCCAGTTGGAGGAACAGTTAAGTTTGAACGGGGACAACTTCAAAGAAACTTGTCCCTTTTATAGTGAGCATGCAATACCACGTGGAATTTCTGGTGCCTTCTCTGGACCAGATGATCATAAACAACTACACGAGGGATATAATGGAGCAAAAGATGGAAGTGGTAATCATTATCATGAATTACTTGACCATGATTGCCCTGGTGGGCAAGAACAAACCTTATCTTGGACAGAGATGCTGGAAACATGCAAGTTCTCATCAGTGAGGAAGTTACCAGAACAACATACATTTGAGGCATCTGAAAATGAAAAGTTACTATCTTCCTCGGCAAGAGAAATGATTGCCAACCAGGAAATCAATTATCCGCTAAACCTCAACAGTAATAATGATGAGAACTCTGTCTTTGCATTTCCTCAAGATGTTGGCGGAGTAAATTTTTTTCCATATTCTTCGGTCGAAACTCAAGGAACTACTTCAGACTACTATGAAAGACTGTTTGACCAGTGCCAAATTCAGGAACCTCGAGATCCATATGCATGCTTGACTATTGAACAGAAACAGAAATTTAAAATCACAGCTGTCTCCCCAGAATATTGTTATGCCACTGAGGCAACAAAGGTGTTCATTATTGGATCCTTTCTCTGCCCTCCCTCGGATTCTACCTGGGGTTGTATGTTTGGTGATGTTGAAGTTCCTGTTGAAATGGTACAGGGTGGCGTAATGTGTTGTGAGGCGCCATCCAATCTTCTTGGAAAGGTTACTCTGTGCATTACTTCAGGAAATAAAGAACCATGCAGTGAAATCAAAGAGTTTGAGTTTCGTAGTAAGACCAATAGTTGCACTCATTGTAGTATTTTGGAAACAGAAGCTGCCAGAAGTCCAGAAGAGCTGTTATTACTTGTTCAATTTGCAGAAATGCTCCTTTCTGCTTCTACTATGAGGGATGACAGCACAGAATCTGGAAGTCTTCTTTCAACAGAACAGAAAGTAGATGATGATTCTTGGGGCCATATTAGAGATGCCATCCTAGTTGGCAATGGAACACCATCCGGTACTATTGATTGGCTTCTTCAAGAGCTGCTGAAGGATAAACTGCAGCACTGGCTTTCTTGCAGATCCAATGAACGAAATGAAAGGGAAGGCTGTTCTTTGTCCAGGAAAGAGCAAGGGATTATACACATGGTTTCTGGATTGGGTTTCGAGTGGGCCCTAAACCCCATTCTCAGTTATGGCGTGGTTGTTAATTTCCGTGACATCAACGGTTGGACTGCCCTTCATTGGGCTGCACGATTTGGAAGGGAAAAAATGGCTGCTTCGCTTATCGCTGCCGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTTCACAAGATCCAAATGGTCTAACTGCTGCATCTATTGCGAATAGCAAAGGACACAAGGGATTGGCAGGTTATCTTGCAGAGGCAGATCTAACATGTCATCTGTCATCCCTCACATTGGAAAAGTGTGAAGTTTCTAAAGATTCTTCTGAGCTTGAAGCTGAGTTAACTGTCAGCAATGTGTCTAATAAATATCTTGAAGCCAGTGATGATGAGGTTTCACTAAAAAAAACCTTGGGTGCTGTCAGAAATGCAGCTCAGGCTGCTGCACTGATACAGGCTGCTTTTCGTGCACTTTCTTTCAGAAAACGGAAAGAGAAAGAAAGTGCACGTGATTACAGAAATGCAACTCAGGCAGCTGCAAGGATACAGACTGCTTATCGTGCACATTCTTTCAGAAAAAGCAGAGAGGGAGGATGTGCTTGTGATTATAATTCAGCTGCCTTATCAATTCAGAAGAAATATCGAGGTCGGAAAGCTCGCAGGGAGTTCTTAGTTTTGCGCCATAAAGTTGTTAAGTTACAGGCTCATGTGCGCGGTTACCAGGCTCGGAAGCAATACAAGGTAATGATATGGGCAGTTGGAATCTTTGACAAGATTGTGCTAAGATGGCGGAGAAAACTAGCTGGTTTGCGAAGATCTCCAGAGGAAATAGATACGAAAGAAGAAAATGATGAAGATTTTCTAAAGGTGTTCAGGCAAGTGAAAGTACATGAATCAATTAAAAAGGCTTTGGCGCGGGTGCATTCTATGGTCCCATCTCCACGCGCTCGTCAGCAATATAATCGCTTGCTTCAGATGCATGATCAAGTCAAGGCTGAATATGGCAATAGACATGATGAAACTCTGTCATCAACTTCTGTAGAGGGTTCTTGGATTATTGAAGATGATGACTTATATCAATTTCCTTTGGAAACTCAGTTATCAACTTCTATAGAGGGTCCTTGGATTTTAAAAGATAATGATTTATATCAATATCCTTTGGAAACTCCTTTATCAACTTCTGGAGAAGGTCCGTGGATTATTGAAGATGATGGTTTATATCAATTTCCTTGGGAAACGCTCTAG 2931 0.4193 MLPGLQYNIDDLFQEAKKRWLKPIEVFYILQNHDVCKFTEVPVNQPRDGSVHLFNKRVMRFFRKDGHNWRKKKDGRTVAEGHERLKVGNVEALNCYYAHGAENRSFQRRSYWMLNPEYEHVVLVHYRETNEGTPNSSPVTQLSTFSHSHRSYTPQNPETTSIADAQALRQLEEQLSLNGDNFKETCPFYSEHAIPRGISGAFSGPDDHKQLHEGYNGAKDGSGNHYHELLDHDCPGGQEQTLSWTEMLETCKFSSVRKLPEQHTFEASENEKLLSSSAREMIANQEINYPLNLNSNNDENSVFAFPQDVGGVNFFPYSSVETQGTTSDYYERLFDQCQIQEPRDPYACLTIEQKQKFKITAVSPEYCYATEATKVFIIGSFLCPPSDSTWGCMFGDVEVPVEMVQGGVMCCEAPSNLLGKVTLCITSGNKEPCSEIKEFEFRSKTNSCTHCSILETEAARSPEELLLLVQFAEMLLSASTMRDDSTESGSLLSTEQKVDDDSWGHIRDAILVGNGTPSGTIDWLLQELLKDKLQHWLSCRSNERNEREGCSLSRKEQGIIHMVSGLGFEWALNPILSYGVVVNFRDINGWTALHWAARFGREKMAASLIAAGASAGAVTDPSSQDPNGLTAASIANSKGHKGLAGYLAEADLTCHLSSLTLEKCEVSKDSSELEAELTVSNVSNKYLEASDDEVSLKKTLGAVRNAAQAAALIQAAFRALSFRKRKEKESARDYRNATQAAARIQTAYRAHSFRKSREGGCACDYNSAALSIQKKYRGRKARREFLVLRHKVVKLQAHVRGYQARKQYKVMIWAVGIFDKIVLRWRRKLAGLRRSPEEIDTKEENDEDFLKVFRQVKVHESIKKALARVHSMVPSPRARQQYNRLLQMHDQVKAEYGNRHDETLSSTSVEGSWIIEDDDLYQFPLETQLSTSIEGPWILKDNDLYQYPLETPLSTSGEGPWIIEDDGLYQFPWETL 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02430 976 SUPERFAMILY Ankyrin repeat 559 650 IPR036770 -
Vifa2g02430 976 FunFam Calmodulin-binding transcription activator 4 isoform A 468 653 - -
Vifa2g02430 976 CDD IPT 358 443 - -
Vifa2g02430 976 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Vifa2g02430 976 SMART iq_5 705 727 IPR000048 GO:0005515
Vifa2g02430 976 SMART iq_5 787 809 IPR000048 GO:0005515
Vifa2g02430 976 SMART iq_5 764 786 IPR000048 GO:0005515
Vifa2g02430 976 SMART iq_5 736 758 IPR000048 GO:0005515
Vifa2g02430 976 Gene3D Immunoglobulins 352 447 IPR013783 -
Vifa2g02430 976 Gene3D - 765 812 - -
Vifa2g02430 976 ProSiteProfiles IQ motif profile. 788 812 IPR000048 GO:0005515
Vifa2g02430 976 Pfam IQ calmodulin-binding motif 767 785 IPR000048 GO:0005515
Vifa2g02430 976 Pfam IQ calmodulin-binding motif 790 809 IPR000048 GO:0005515
Vifa2g02430 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 815 IPR027417 -
Vifa2g02430 976 Gene3D - 706 756 - -
Vifa2g02430 976 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 895 - -
Vifa2g02430 976 Gene3D - 525 656 IPR036770 -
Vifa2g02430 976 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Vifa2g02430 976 ProSiteProfiles Ankyrin repeat region circular profile. 588 614 - -
Vifa2g02430 976 SMART ANK_2a 627 656 IPR002110 GO:0005515
Vifa2g02430 976 SMART ANK_2a 588 617 IPR002110 GO:0005515
Vifa2g02430 976 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Vifa2g02430 976 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Vifa2g02430 976 SMART CG_1_2 12 130 IPR005559 GO:0003677
Vifa2g02430 976 Pfam Ankyrin repeats (many copies) 590 647 IPR002110 GO:0005515
Vifa2g02430 976 SUPERFAMILY E set domains 358 442 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02430 Vifa-Chr2 629622277 629629668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02430 5 924 CAMTA Transcription Factor Family AT1G67310 46.475 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifa2g02430 CG-1 2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02430 K21596 - gmx:100791430 1134.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02430 2 629622277 629629668 Vifa2g02430 2 629622277 629629668 ECH
Vifa2g02430 2 629622277 629629668 Vifa2g02430 2 629622277 629629668 PCT