Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02426 ATGGGAAGAGGAAGAGTGGAACTCAAGAGAATTGAGAACAAGATCAACAGACAAGTTACCTTTGCAAAAAGAAGAAATGGTCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCAAGCATGCTGAAAACACTTGAAAGGTATCAGAAATGCAACTATGGAGCACCTGAGGGTAATGTGACATCAAAGGAGGCTTTGGAACTAAGCAGTCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAGTCTCTACAACGCTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGATCTTGAAACTCTTGAAAGGCAGCTTGATTCTTCCTTGAAGCTAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTGGGAGATCTTCAACGTAAGGAACACTTGCTATGTGAAGCAAACAGAGCTCTCAGACAAAGGGTGGAAGGGTATCAAATAAATTCACTCCAACTGAATCTGAGTGGTGAAGATATGGGATATGGACATCATCATCATCATCATCAAGGTCATACCCAAGGTGATGAACTATTTCAAGTTCAACCAATTGAGTGTGAGCCAACGCTACAGATTGGATATCATCATGGTGATCCAGGATCAGTGGTGACAGCAGGGCCAAGCATGAATAACTATATGGGTGGATGGTTACCATGA 747 0.423 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKLIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRVEGYQINSLQLNLSGEDMGYGHHHHHHQGHTQGDELFQVQPIECEPTLQIGYHHGDPGSVVTAGPSMNNYMGGWLP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02426 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vifa2g02426 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa2g02426 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa2g02426 248 Pfam K-box region 90 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa2g02426 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa2g02426 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vifa2g02426 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
Vifa2g02426 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa2g02426 248 Coils Coil 126 146 - -
Vifa2g02426 248 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Vifa2g02426 248 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa2g02426 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa2g02426 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa2g02426 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa2g02426 248 FunFam MADS-box transcription factor 7 13 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02426 Vifa-Chr2 627637072 627640746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02426 1 248 MADS-box Gene Family AT1G24260 71.713 1.23e-113 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa2g02426 K-box 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02426 - - gmx:100805078 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02426 2 627637072 627640746 Vifa2g02426 2 627637072 627640746 ECH