Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g02425 | ATGGGAAGAGGAAGAGTGGAACTCAAGAGAATTGAGAACAAGATCAACAGACAAGTTACCTTTGCAAAAAGAAGAAATGGTCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCAAGCATGCTGAAAACACTTGAAAGGTATCAGAAATGCAACTATGGAGCACCTGAGGGTAATGTGACATCAAAGGAGGCTTTGGTATTGGAACTAAGCAGTCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAGTCTCTACAACGCTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGATCTTGAAACTCTTGAAAGGCAGCTTGATTCTTCCTTGAAGCTAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTGGGAGATCTTCAACGTAAGGAACACTTGCTATGTGAAGCAAACAGAGCTCTCAGACAAAGGGTGGAAGGGTATCAAATAAATTCACTCCAACTGAATCTGAGTGGTGAAGATATGGGATATGGACATCATCATCATCATCATCAAGGTCATACCCAAGGTGATGAACTATTTCAAGTTCAACCAATTGAGTGTGAGCCAACGCTACAGATTGGATATCATCATGGTGATCCAGGATCAGTGGTGACAGCAGGGCCAAGCATGAATAACTATATGGGTGGATGGTTACCATGA | 753 | 0.4223 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKLIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRVEGYQINSLQLNLSGEDMGYGHHHHHHQGHTQGDELFQVQPIECEPTLQIGYHHGDPGSVVTAGPSMNNYMGGWLP | 250 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g02425 | 250 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Vifa2g02425 | 250 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Vifa2g02425 | 250 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Vifa2g02425 | 250 | Pfam | K-box region | 94 | 175 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vifa2g02425 | 250 | Coils | Coil | 128 | 148 | - | - | |
Vifa2g02425 | 250 | ProSiteProfiles | K-box domain profile. | 91 | 181 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Vifa2g02425 | 250 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Vifa2g02425 | 250 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
Vifa2g02425 | 250 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 192 | - | - | |
Vifa2g02425 | 250 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Vifa2g02425 | 250 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Vifa2g02425 | 250 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Vifa2g02425 | 250 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Vifa2g02425 | 250 | Gene3D | - | 13 | 81 | IPR036879 | GO:0003677|GO:0046983 | |
Vifa2g02425 | 250 | FunFam | MADS-box transcription factor 7 | 13 | 100 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g02425 | Vifa-Chr2 | 627637072 | 627640746 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g02425 | 1 | 250 | MADS-box Gene Family | AT1G24260 | 71.713 | 6.71e-116 | 330 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Vifa2g02425 | K-box | 5.1e-26 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g02425 | - | - | gmx:547686 | 399.823 |