Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02409 ATGGTTTCAATCCTCAAATTCCGTAGAATCTTATACGGTGGTTTGAGACACTGTCATTTTGAGGGGCGTAGTAGAAGTTTGGGTGAAAACGAGAAGCTATGTAGGGTAGGGCTTTTCTGGGACTTGGATAACAAACCACCCAGTTCAATTCCACCTTACGAAGTTGCCAATAAGCTCAGAATTGCTGCAGCTTCCTTCGGTGTTGTTCGCCATATGGTAGCTTATGCCAATACTCACACTTTTAGCATTGTCCCTAGTGTTGTTCGTGAGAGTCGGAAAGAGAGAGAATTGTTGTATAGTTTGGAGAATAAGGGTGTGATCAAACGTAACCAGCCTCATCTTTGTCGTGTTTGTGGGAGAAAGTTTTATACAAATGAAAAACTTGTTAACCATTTCAAGCAGTTGCATGAGCGTGAGCACGCGAAAAGGGTGAATCAGATAGAGTCGGCTAGAGGGAGTAGGAAAGTGAAGTTGGTGGGGAAGTTTGCTATGAAAATGGAAAAGTATAAGAAAGCTGCAAGGACTGTTCTGACTCCCAAAGTTGGGTATGGTTTGGCGGATGAGCTCAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTGGATAGACCGCAAGCTGCAGATGTTGCATTGCGAAAGCATATGGTGGATATGATGGATCATAGGCGAGTTGAGTGCGTGGTCCTTGTATCAGATGATTCTGATTTTGTTCATGTGATCAAGGAAGCAAAGCTGCGATGTCTCAAGACTGTTGTTATTGGGGATCTTACTAGTGACGGAGTCTTAAAAAGGACCGCCGATACTGCATTTTCTTGGGAGGAAATTTTGATGGGGAAGGCTAAGAAGGAGGCTGTATCGGTTCTGGAAAATTGGAAAGATCGGGATATATTGAAAAGGTTAGAGTGGACTTACAACCCTGATGTCGATAAAAAGAAACTCAACCTGGATGATGATGATATATCTGGAGATGATGATATTGAAGATATCTGTGACGAAATCGATAATGACTACAAGGATGACAGAGGTTCTTGGTGGAAATTAGACTCTGATGATGATAATGTTACTAATTGA 1068 0.4242 MVSILKFRRILYGGLRHCHFEGRSRSLGENEKLCRVGLFWDLDNKPPSSIPPYEVANKLRIAAASFGVVRHMVAYANTHTFSIVPSVVRESRKERELLYSLENKGVIKRNQPHLCRVCGRKFYTNEKLVNHFKQLHEREHAKRVNQIESARGSRKVKLVGKFAMKMEKYKKAARTVLTPKVGYGLADELKRAGFWVQTVLDRPQAADVALRKHMVDMMDHRRVECVVLVSDDSDFVHVIKEAKLRCLKTVVIGDLTSDGVLKRTADTAFSWEEILMGKAKKEAVSVLENWKDRDILKRLEWTYNPDVDKKKLNLDDDDISGDDDIEDICDEIDNDYKDDRGSWWKLDSDDDNVTN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02409 355 Pfam NYN domain 185 268 IPR021139 GO:0004540
Vifa2g02409 355 Gene3D - 28 275 - -
Vifa2g02409 355 CDD PIN_LabA-like 123 254 - -
Vifa2g02409 355 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 33 352 - -
Vifa2g02409 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 141 IPR013087 -
Vifa2g02409 355 ProSitePatterns Zinc finger C2H2 type domain signature. 115 136 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02409 Vifa-Chr2 623190652 623191719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02409 20 350 C2H2 Transcription Factor Family AT4G12240 58.683 8.78e-139 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g02409 NYN 1.3e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02409 - - tpra:123908087 556.214