Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02396 ATGTCTCCCTCAAACTCAATGCTCAAAACCCTAATTTCTCTCTCTAAACTCTTCCTCTCTTTCTCTCTCCTCCTCCACACCGCCATTGCCGATGACGGTGTTTTCATGTCCAAGCTGGCCAAATCACTTTCACCAACTCCCTCAGGCTGGACCACGGCGACCACATTCTGCAGCTGGACCGGCGTGAAATGCGACGATTCTAACCGCGTTACGTCCATCAACGTACCTTCAAAGTCACTCACCGGAACTATACCTTCCGATCTGAACTCACTCTCTCAACTCACCTCCATCTCTTTCCAGTCCAACTCGCTCGCCGGCGCGTTACCTTCACTCGCTAATCTCTCTAATCTTCAGTCGGTTTTTCTCAGTAGTAACAACTTTACTTCAATCCCTGATGGTTGTTTTCAGGGTCTCACCAGTCTCCAGAAGCTTTCCATGACTGGAAACACCAACCTTAAACCATGGAGCTTTCCCTCTGAGTTGACTCAGTCTTTGAATCTCGTTGAACTCGACCTTGGTCAAACGAACCTTATAGGTTCCTTGCCGGATATATTCTCTCCATTGTTCAGTTTGCAGAACCTTCGTCTAGCTTACAACAATCTAACCGGAGATTTACCGAACTCGTTTTCAGGATCTGGGATTCAGAACCTGTGGCTCAACAATCAGCAAGATGGTTTCGGGTTCACTGGCTCTCTCGATTTGCTTTCTTCGATGTCTCATTTGACTCAAGTTTGGTTTCAGAAGAACAAGTTCACTGGTCCCATTCCTGATTTAACTAACTGTACTAATTTGTTTGATCTTCAGCTTCGTGATAATCAGTTAACGGGTGTTGTTCCGCCTTCTTTGATGAGTTTAGCTAGTTTGACCAACGTTTCATTGGATAACAATCATTTGCAGGGTCCTTTTCCTTCTTTTGGGAAACGTGTAAAGGTTGCTCCTAATGATGGGATCAATAGCTTTTGTAAAGACACTCCCGGACCTTGTGATCCCAGGGTTACTACTTTGCTTGATGTTGCTGCTGGTTTTGGGTATCCTCTTCAGTTGGCTACTTCTTGGATAAAGAATGATCCTTGTCAAGATTGGAGCTTTGTTTTGTGTTCAGGAGGGAAGATTATTACTGTGAATTTAGCTAAGCTGAACTTGAATGGAACTATTTCACCTGCATTTGGGCATTTAACTGATTTGAGGAATTTGTATCTGGGTGGTAACAACTTGTCTGGTTCCATACCGGGGAGCTTGACGGGTTTGACTCAACTTGAGGTTTTGGATGTGTCTAACAACAATCTATCCGGAGAGATTCCTAAATTCTCTACTAAAGTGAAGTTCAATTCTGCTGGTAATGCTTTGCTTGGGCCTTCTGGAGGCGATAGAGGAAAGGGAACTACTCCACCAGAGAGTTCTGGTGGTGCACCAAGTGGAAGTCCATCAGGAAAGTCAGGTGGTTCATCGCTGTCGCCTGCTTGGATCGCAGGTATAGCTGTTATTGCTGTGTTTTTTGTTGCAGTGGTGTTGTTTGTGTTTTGTAAGTGTTATACTAAGAATCGGAGGCATGGGGAATTCGGAAGGGTTAATAATCCTGAAAATGGAAAAGGTGAGGTTAAACTTGATGTCATGAGTGTTTCCAATTCTAATGGATATGGTGGAGTTCCAAGTGAGTTACAGAGTCAGGGAAGTGAGGGTAGTAACAACCTTCAGGTTTTTGAGGGTGGAAATGTTACTATTTCAATCCAAGTTCTTAGGCAAGTAACTGGTAATTTCAGTCAAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTGCATGATGGAACTAAGATTGCTGTGAAGAGGATGGAATCTGTTGCAGTGGGAACTAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTAACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATTCTGCATTAACGGAAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGAACATTAACACAACACCTGTTTGATTGGGGTGAAAACGGATGTGCTCCTTTGACTTGGAAACAAAGAGTAGCAATAGCTTTGGATGTTGCACGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCCAACATACTATTGGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCAGATGGGAAATATTCCGTTGAGACGAGGTTGGCAGGAACATTTGGATATTTGGCACCTGAATATGCAGCCACTGGAAGAGTAACAACCAAAGTAGATGTTTATGCATTTGGAGTAGTTCTGATGGAATTGATTACTGGTAGAAGGGCATTGGATGATACTATGCCTGATGAACGATCCCATTTGGTTTCATGGTTCCGCCGGGTACAAGTCAACAAGGAGAACATACCTAAAGCAATCGATCAAACATTGAACCCCGACGAAGAAACCATGGAGAGCATATATAAAGTGGCCGAGCTAGCAGGCCATTGCACTGCTCGCGAACCATACCAGAGGCCGGATATGGGACATGCAGTGAATGTTCTAGTTCCTCTGGTAGAGCAATGGAAGCCTACCAGTCATGAAGAAGAAGATGGTTATGGTATTGACCTTCACATGAGCCTCCCTCAAGCTTTGCAAAGATGGCAAGCCAATGAAGGCACTTCCCAAATGTTTAACGACACATCTTTCTCACAAACCCAATCAAGTATTCCTGCAAAACCTTCCGGATTCGCCGACTCCTTTGATTCAATGGATTGCCGATAA 2805 0.4392 MSPSNSMLKTLISLSKLFLSFSLLLHTAIADDGVFMSKLAKSLSPTPSGWTTATTFCSWTGVKCDDSNRVTSINVPSKSLTGTIPSDLNSLSQLTSISFQSNSLAGALPSLANLSNLQSVFLSSNNFTSIPDGCFQGLTSLQKLSMTGNTNLKPWSFPSELTQSLNLVELDLGQTNLIGSLPDIFSPLFSLQNLRLAYNNLTGDLPNSFSGSGIQNLWLNNQQDGFGFTGSLDLLSSMSHLTQVWFQKNKFTGPIPDLTNCTNLFDLQLRDNQLTGVVPPSLMSLASLTNVSLDNNHLQGPFPSFGKRVKVAPNDGINSFCKDTPGPCDPRVTTLLDVAAGFGYPLQLATSWIKNDPCQDWSFVLCSGGKIITVNLAKLNLNGTISPAFGHLTDLRNLYLGGNNLSGSIPGSLTGLTQLEVLDVSNNNLSGEIPKFSTKVKFNSAGNALLGPSGGDRGKGTTPPESSGGAPSGSPSGKSGGSSLSPAWIAGIAVIAVFFVAVVLFVFCKCYTKNRRHGEFGRVNNPENGKGEVKLDVMSVSNSNGYGGVPSELQSQGSEGSNNLQVFEGGNVTISIQVLRQVTGNFSQDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTKGLNEFQAEIAVLTKVRHRHLVALLGFCINGNERLLVYEYMPQGTLTQHLFDWGENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTMPDERSHLVSWFRRVQVNKENIPKAIDQTLNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEDGYGIDLHMSLPQALQRWQANEGTSQMFNDTSFSQTQSSIPAKPSGFADSFDSMDCR 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02396 934 FunFam Receptor-like kinase TMK4 30 326 - -
Vifa2g02396 934 MobiDBLite consensus disorder prediction 906 934 - -
Vifa2g02396 934 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672|GO:0006468
Vifa2g02396 934 Pfam Leucine rich repeat 93 149 IPR001611 GO:0005515
Vifa2g02396 934 Pfam Leucine rich repeat 380 429 IPR001611 GO:0005515
Vifa2g02396 934 ProSitePatterns Protein kinases ATP-binding region signature. 592 614 IPR017441 GO:0005524
Vifa2g02396 934 Pfam Protein tyrosine and serine/threonine kinase 589 860 IPR001245 GO:0004672|GO:0006468
Vifa2g02396 934 FunFam receptor protein kinase TMK1 664 881 - -
Vifa2g02396 934 FunFam Leucine-rich repeat receptor-like kinase 330 453 - -
Vifa2g02396 934 ProSiteProfiles Leucine-rich repeat profile. 116 137 IPR001611 GO:0005515
Vifa2g02396 934 SMART serkin_6 586 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02396 934 MobiDBLite consensus disorder prediction 449 480 - -
Vifa2g02396 934 Gene3D Transferase(Phosphotransferase) domain 1 664 885 - -
Vifa2g02396 934 Gene3D Ribonuclease Inhibitor 330 452 IPR032675 -
Vifa2g02396 934 CDD STKc_IRAK 592 865 - -
Vifa2g02396 934 Gene3D Phosphorylase Kinase; domain 1 550 663 - -
Vifa2g02396 934 MobiDBLite consensus disorder prediction 465 480 - -
Vifa2g02396 934 SMART LRR_typ_2 392 415 IPR003591 -
Vifa2g02396 934 SMART LRR_typ_2 188 211 IPR003591 -
Vifa2g02396 934 SMART LRR_typ_2 416 440 IPR003591 -
Vifa2g02396 934 SMART LRR_typ_2 114 137 IPR003591 -
Vifa2g02396 934 MobiDBLite consensus disorder prediction 906 921 - -
Vifa2g02396 934 Gene3D Ribonuclease Inhibitor 34 328 IPR032675 -
Vifa2g02396 934 Pfam Leucine rich repeat N-terminal domain 39 65 IPR013210 -
Vifa2g02396 934 Pfam Leucine rich repeat N-terminal domain 333 367 IPR013210 -
Vifa2g02396 934 PANTHER OSJNBA0070M12.3 PROTEIN 17 934 - -
Vifa2g02396 934 SUPERFAMILY Protein kinase-like (PK-like) 564 862 IPR011009 -
Vifa2g02396 934 FunFam receptor protein kinase TMK1 548 663 - -
Vifa2g02396 934 SUPERFAMILY L domain-like 37 434 - -
Vifa2g02396 934 ProSiteProfiles Protein kinase domain profile. 586 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02396 Vifa-Chr2 619535734 619539320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02396 70 862 Receptor kinase-like Gene Family AT5G07280 33.011 2.64e-94 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vifa2g02396 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02396 - - gmx:100781851 1457.2