Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02385 ATGGAATCAGGTGGTGGTGGTAGTGGTGGTCCAACAAATTTCCTAAGGAAAACATACCAGCTGGTTGATGATCCTTCTAATGATGAGATAGTAGCTTGGAGTGAAGGCAACAACAGTTTCATCATTAAGGATGAAATTAAATTTGCCAGCAATGTTCTTGGCAAGTATTTCAGACACAACAATTTCTCCAGTTTTGTTCGTCAACTCAACACCTATGGATTCCGAAAAATAAGCCAGGATCAATGTGAATTTTATAATCCATATTTTCGGAAAGGTCAATATTATCTTCTTGGTAATATTCACCGCAAGAAAACTGTTTACAGTCACTCTCCTGGAGAAGTAGAAAGGGTTGCATTTGAAGAAGAAATTGAGAAACTTGCTAATGAAAAAGCCTCTATTGAATTAGATATTTCTCGCTTCAATCAGTACAAGCTTCATGTGGGAAATCTAGTGCGTAGATTAGAAGCTTCAGAGAATAGGTATAATAATTTGAAGAACTCGTTGGAAATGATTCTTCAAAACCCTAATTTGGTTGAAAAAATGAATAAGAAAATTGACTTCATTTTTTCTTCAAAATTTTCCAATAAAAGCTCCTCTCCTGATGCTGCTGATAATGATAGCAACAATGAAGCTACGGAAGCTGGAAATAGTTTGGGTGATAATGATAGCTACTATCCGTTGATGGAAGTTGAAGATGATTTTGCTGACATTGATACCAATTTTGGATTATGGGATTTTGAAGATATTTTGGCTGAATTATAG 762 0.353 MESGGGGSGGPTNFLRKTYQLVDDPSNDEIVAWSEGNNSFIIKDEIKFASNVLGKYFRHNNFSSFVRQLNTYGFRKISQDQCEFYNPYFRKGQYYLLGNIHRKKTVYSHSPGEVERVAFEEEIEKLANEKASIELDISRFNQYKLHVGNLVRRLEASENRYNNLKNSLEMILQNPNLVEKMNKKIDFIFSSKFSNKSSSPDAADNDSNNEATEAGNSLGDNDSYYPLMEVEDDFADIDTNFGLWDFEDILAEL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02385 253 Gene3D - 9 105 IPR036388 -
Vifa2g02385 253 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g02385 253 MobiDBLite consensus disorder prediction 194 219 - -
Vifa2g02385 253 FunFam Heat stress transcription factor B-4 7 104 - -
Vifa2g02385 253 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g02385 253 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 208 IPR027725 -
Vifa2g02385 253 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g02385 253 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g02385 253 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g02385 253 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Vifa2g02385 253 Coils Coil 116 136 - -
Vifa2g02385 253 MobiDBLite consensus disorder prediction 194 223 - -
Vifa2g02385 253 Coils Coil 147 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02385 Vifa-Chr2 616683280 616684129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02385 14 202 HSF AT4G13980 43.434 1.82e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa2g02385 HSF_DNA-bind 1.7e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02385 K09419 - psat:127135227 233.802