Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02369 ATGGCTTTCTGCAACAAGCTTGGAAACCTCTTGAGGCAGGGTGCTACTCAGAGTAGCCATGCTCCTGTTTCATCCATGCTTAACTATCTTCGGCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAAGGATGCATTTCAAAGCTATGGGGAGGTCATCGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCGAGGGGATTTGGATTTGTCAACTTCACTAGTGATGAGTCTGCAACTTCAGCACTCTCTGCTATGGATGGGCAGGATTTGAATGGGCGAAACATTCGTGTGTCCTATGCAAATGACAGACCTTCTGCACCTCGTGGTGGTGGTGGCGGTTATGGTGGTGGCTATGGGGATGGTGGTTTTTCAAACCGTGGCGGTGGTGGTGGTGGTTGGTGA 438 0.4863 MAFCNKLGNLLRQGATQSSHAPVSSMLNYLRHMSSSKLFIGGLSYGVDDQSLKDAFQSYGEVIEARVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQDLNGRNIRVSYANDRPSAPRGGGGGYGGGYGDGGFSNRGGGGGGW 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02369 145 SUPERFAMILY RNA-binding domain, RBD 28 144 IPR035979 GO:0003676
Vifa2g02369 145 SMART rrm1_1 37 110 IPR000504 GO:0003723
Vifa2g02369 145 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 12 143 - -
Vifa2g02369 145 Gene3D - 15 145 IPR012677 -
Vifa2g02369 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Vifa2g02369 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Vifa2g02369 145 MobiDBLite consensus disorder prediction 111 145 - -
Vifa2g02369 145 FunFam Glycine-rich RNA-binding protein 2 25 145 - -
Vifa2g02369 145 CDD RRM2_NsCP33_like 37 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02369 Vifa-Chr2 611329897 611330911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02369 36 124 Eukaryotic Initiation Factors Gene Family AT4G34110 40.449 4.87e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02369 - - gmx:100499841 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02369 2 611329897 611330911 Vifa2g02369 2 611329897 611330911 ECH