Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02366 ATGAATTACTGTAATAGAATAACGATCCAACCAACTGTAGCACCAAATTCCCTTACATATCCCAGAATTAGACCCAACTTTGTAAAACTACAGATTCAAAACTATGGTTCTAGTTCTTTGCTCAAAATAAAAGCTTCAATCAACAACGACAACAATAACTTTGTTTCATCCAAATCAGAATTAACCTTGTATGAAGTTTTGGGTATATCTGAATCTGTATCCACAGTGGAATTGAAGCGCGCTTATAAGCAGAAGGCCCGAAAGTGTCACCCAGATTTGTCTCCACCGGATCAGGTCAAAGAGTACACAAAGAGGTTCATTATGGTGCGAGAGGCTTATGAGATGTTGTCTGATCCAGTAACGAGAGCTATTTATGATAGAGATTTGGCTAAAGGGATTTCATTTGCATTTTCTACTAGCAGACGCTACTGTCATCGCTCTCATTATGACCAGGTGAGTGAAGAAAAGAAAAAATGGAAACGTCAGTGGGAATCTCAACTGGCGGAGCTGGAAAAAAAGAGTGATGGCAAGAAGGATAAAGGAAATATGGCTTGGGCTGCTCGAGTGCGTCAACGTAGTAATCATTAG 588 0.398 MNYCNRITIQPTVAPNSLTYPRIRPNFVKLQIQNYGSSSLLKIKASINNDNNNFVSSKSELTLYEVLGISESVSTVELKRAYKQKARKCHPDLSPPDQVKEYTKRFIMVREAYEMLSDPVTRAIYDRDLAKGISFAFSTSRRYCHRSHYDQVSEEKKKWKRQWESQLAELEKKSDGKKDKGNMAWAARVRQRSNH 195
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02366 195 MobiDBLite consensus disorder prediction 170 195 - -
Vifa2g02366 195 CDD DnaJ 62 118 IPR001623 -
Vifa2g02366 195 Coils Coil 160 180 - -
Vifa2g02366 195 MobiDBLite consensus disorder prediction 170 185 - -
Vifa2g02366 195 PRINTS DnaJ domain signature 64 82 IPR001623 -
Vifa2g02366 195 PRINTS DnaJ domain signature 101 121 IPR001623 -
Vifa2g02366 195 PRINTS DnaJ domain signature 82 97 IPR001623 -
Vifa2g02366 195 Gene3D DnaJ domain 46 142 IPR036869 -
Vifa2g02366 195 SUPERFAMILY Chaperone J-domain 59 140 IPR036869 -
Vifa2g02366 195 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Vifa2g02366 195 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 39 194 - -
Vifa2g02366 195 Pfam DnaJ domain 63 126 IPR001623 -
Vifa2g02366 195 SMART dnaj_3 61 121 IPR001623 -
Vifa2g02366 195 ProSiteProfiles dnaJ domain profile. 62 129 IPR001623 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa2g02366 Vifa-Chr2 610447478 610448150 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02366 56 126 C2H2 Transcription Factor Family AT1G74250 43.038 1.20e-06 46.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02366 - - psat:127083191 284.263