Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02346 ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCCGCGGCCGAAAATGCACCACTTCCAACTTTGGTTAACAATGCAACCTCTCAACCTCCTTCTCGACCTGTTTATGTTCCTCCTCATCTGAGGAACCGTGGAGCTAACGCGCCGCCGCCTTTACCTGCTTCAGCTTCTTCGGGGAATTTTAATGCTCCGCCTGGGAATGATAACTCCGGATCGCGGTGGGCACCGCCGCCGAGGAATGATTACCGTGGTCGTCCTGGTGGTTATGGGAACAGGACTGGTGGTGGTGGTTGGGATAGGCGGGAGGCTAATCCTTTTGCAGATCAGGATGATTCTGAGGAGCCGGTTACTCAAGAGGAGCAGGAGAGTACGGGGATAAATTTTGATGCTTATGAGGATATTCCGGTGGAGACGAGCGGTGGTAATGTTCCTCCGCCGGTGAATACTTTTGCTGAGATTGATTTGGGTGATGCGCTCAATGAGAATATAAGACGGTGCAAATATGTGAAGCCCACACCTGTTCAGCGGCATGCAATACCTATATCGCTTGGGGGAAGGGATTTGATGGCTTGTGCGCAAACTGGTTCTGGAAAGACTGCTGCTTTTTGTTTTCCGATTATCAGTGGGATTATGACGGGCCAACCTGCTCAGAGGCCGCCTCGTGGGGTGCGTACTGTGTGTCCACTTGCCCTTGTTCTCTCTCCGACTAGAGAGCTATCGATGCAGATACACGAAGAGGCTAGGAAATTTTCCTACCAGACAGGAGTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGAGAGCTTGAGAGAGGGGTGGACATTCTTGTTGCGACTCCTGGAAGGTTGGTAGATTTGTTGGAAAGAGCTAGAGTTTCACTGTCGATGATCCGGTATCTTGCCTTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTGGAACAAATGGACATGCCTCCAGCAGGTGCAAGGCAGACCATGCTGTTCAGTGCCACTTTTCCAAAAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTCGGAAGGGTGGGATCAAGTACCGATTTAATTGACCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAAAGAGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTCGAGACAAAGAAAGGAGCTGATGCTCTCGAACACTGGTTGTGTCTTAATAATTTTCCAGCAACTACTATTCACGGTGACAGGACACAACAGGAAAGAGAACATGCATTAAAGTCATTTAAAAGTGGCAAAACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCACGTAGTTAACTTTGACCTTCCCAATGATATTGACGATTATGTACACCGTATTGGAAGGACAGGGAGGGCAGGAAAGAAAGGTCTTGCAACTGCGTTCTTTAATGAAAACAATACATCCCTTGCAAGGTCTCTAGGAGATTTGATGCAAGAAGCAAATCAAGAAGTACCTGCCTGGCTGTCGCGGTTTGCTGCACGATCTTCCTATGGTGGAGGAAAGAACCGTCGATCAGGAGGCCGATTTGGTGGCCGTGACTTTAGAAGAGAAGGTTCATATAGTAGGGGTGGTTCTGATTACCATGGTGCAGGAAATAGCAGTGGTGGATATGGGGCTTCTGGTGGTGGATATGGGGCTTCTGGTGGGTATGGTGGCGGCGGGTATGCAGGAAATAGCGCGGGTCCTGGGGTGACCAGTGCATGGGACTGA 1860 0.4855 MRSSWADLAANSAAENAPLPTLVNNATSQPPSRPVYVPPHLRNRGANAPPPLPASASSGNFNAPPGNDNSGSRWAPPPRNDYRGRPGGYGNRTGGGGWDRREANPFADQDDSEEPVTQEEQESTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRTQQEREHALKSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSLARSLGDLMQEANQEVPAWLSRFAARSSYGGGKNRRSGGRFGGRDFRREGSYSRGGSDYHGAGNSSGGYGASGGGYGASGGYGGGGYAGNSAGPGVTSAWD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02346 619 FunFam Probable ATP-dependent RNA helicase DDX4 109 366 - -
Vifa2g02346 619 MobiDBLite consensus disorder prediction 53 69 - -
Vifa2g02346 619 MobiDBLite consensus disorder prediction 17 31 - -
Vifa2g02346 619 MobiDBLite consensus disorder prediction 556 572 - -
Vifa2g02346 619 MobiDBLite consensus disorder prediction 545 584 - -
Vifa2g02346 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 518 IPR027417 -
Vifa2g02346 619 SMART ultradead3 167 379 IPR014001 -
Vifa2g02346 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 375 542 IPR001650 -
Vifa2g02346 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 364 IPR014001 -
Vifa2g02346 619 Pfam Helicase conserved C-terminal domain 388 503 IPR001650 -
Vifa2g02346 619 FunFam ATP-dependent RNA helicase RhlB 367 546 - -
Vifa2g02346 619 CDD DEADc_DDX3_DDX4 149 370 IPR044763 GO:0003724|GO:0005524
Vifa2g02346 619 CDD SF2_C_DEAD 376 512 - -
Vifa2g02346 619 Pfam DEAD/DEAH box helicase 172 353 IPR011545 GO:0003676|GO:0005524
Vifa2g02346 619 Gene3D - 103 366 IPR027417 -
Vifa2g02346 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
Vifa2g02346 619 Gene3D - 367 547 IPR027417 -
Vifa2g02346 619 MobiDBLite consensus disorder prediction 1 126 - -
Vifa2g02346 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 542 - -
Vifa2g02346 619 SMART helicmild6 422 503 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02346 Vifa-Chr2 605928489 605933374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02346 137 535 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 5.94e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02346 K11594 - gmx:100781743 921.768