Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02342 ATGAAGGCTTTGTGTCTCGTAGCACAACAATACAAAGCTCTTCTGAAAAAGAACGTACTCCTCTCATGGCGAAGCAAACGTGCAACTCTAGTCCAATTACTCTCTCCAATCATCTTCATTTTCCTAATCTTTGCCATAGACAAAGCACTCAAAGCACAAACTGCCACAACTTCATCATACAAATCCGTAACAAACCCTTCCTCACTACCTTCCCCACCGATCCCACCTTGCGAGAATAAATTCCTCGTAAAACTTCCTTGTTACGATTTTGTATGGAGTGGTGATAACAATCCAAAGTTTCACTCCATTGTAAGCAGAATTATTAGTAATAACCCTGGTAGACCTATTCCGATTTCTAAAGTGAAGTCGTTTCGCGATAAAGGTGAGGTTGATAAGTGGCTTTTTGATAATCCTATGCAATGTCCTGTTGCGATTCATTTTCTTGAAAAGAATGCTAGTGTTATTAGTTATGGGATTCAGACTAATTCTACTAGTGTTGAGAAACGTGGAAGATATGAAGATCCTACGTTTTCTTTTCAGTTACCTCTTCAGCTTGCTGCTGAACGTGAGATCGCTAGATTCCTTATTGGAGACCCCAGCTTCAAGTGGAATGTGTCTTTGAAGGAATTCCCTCACCCAGCAACGAGTCCTTCCTCTGTTGTAGGAACAATAGGTCCATCATTTTTTCTTGCAATTGCCATGTTTAATTTTGTTCTTCAGATGAGTTCTTTGGTCACTGAAAAAGAGCTTAAACTTCGCCAGGCAATGACTGTGATGGGGCTTTACGACTCTGCATACTGGTTATCATGGCTAACCTGGGAGACCGTTGTTACATTCCTATCATCTATTCTCATACTTCTCTCTGGCATGATGTTTCGGCTTGATTTCTTCTTGAAAAACAGTTTCGCTGTTCTGTTCTTTTTGTTCTTCCTATTTCAACTCAACATGACTGGGCTGGCCTTCATGTTATCTGCTTTCATTAGTAAATCTTCTTCTGCAACAACGGTCGGCTTCTCCATATTTATTGTCGGCTTTGTGACTCAGCTTGTGGCACTAGCAGGAATTCCTTATACTAAGAGCATCTCTGTTACTTTCCGAAATGTATGGTCATTGTTTCCGCCTAATCCTTTTGCTCGAGGCCTGATTATGCTTTCAAAAGCAGTTTCTGAACATAAAGGTGTTAGCTGGAGTAAACGGGGAAAATGTGCCGATGATGACGTTGGCTGTGTGCTCACAATTAATGATATTTATAAATGGTTTCTGGCGACATTCTTTCTGTGGTTCGTTCTGGCCTTGTACTTTGACAATATAATCCCGAATGCAATGGGTGTGAGGAAATCCGTGTTCTACTTTCTAAATCCTTATTATTGGATGGGAAAGGGAGGACAAAAAGTGAAAGAGGGCGGAGTTTGTAGTTGCTTAATTTCAGCCCGTCATGAAGATAATAGCACAGCAAATGATGAAGATGTCCTTGAGGAGGAAAATGCTGTCAAGTTGCAACAAACACAAGGTGTGGTTGATGCAAATCTTGCTGTTCAGATACACGGCATCAAAAAGACTTATCCTGGTACATGTAACATCGGTTGCTGCTGTAAATGTAAAAGAAGTGCACCTTATCACGCTCTTAAGGGCTTGTGGGTGAACTTTACAAAGGATCAGTTATTTTGTCTTTTAGGACCAAATGGAGCTGGAAAAACTACAGCTATTAACTGTTTGACAGGGATAACTCCAGTAACTGATGGAGATGCATTGATTTATGGACATTCGGTCCAAAGCTCCACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTGTGTCCCCAGTTTGATATCCTTTGGGATGCACTGTCTGGTCAAGAACACCTCGAACTCTTCGCTAGTATTAAAGGCCTTTCCTCAGCTTCTATAAAATCAATTACTCAGACATCATTGGCAGAGGTGAGACTCCTGGATGCAGCCAGAGTAAGATCTGGGAGTTACAGTGGAGGAATGAAACGTCGTCTCAGTGTTGCAATTGCCCTTATTGGTGATCCTAAATTAGTCATTTTGGATGAACCGACCACCGGTATGGATCCAATAACAAGGAGGCATGTGTGGGACATAATTGAGAATGCGAAAAGAGGGCGTGCCATTGTTCTCACAACACATTCTATGGAAGAAGCTGATATTCTAAGTGACCGCATAGGAATCATGGCAAAGGGAAAGCTCCGATGCATTGGCACCTCAATTAGATTGAAGTCACGCTTTGGCACTGGTTTTATTGCAAATATTAGCTTCTACGGAAACAATAATGAAAACAGTCCTGTAAACGGTGATGCAGTATCAACAAGAAGACATCATGAGGGTGTGAAGCTATTCTTCAAGAATCGATTAGATGTAGTACCGAAAGAGGAGAACAATAACTTTCTAACTTATGTGATTCCCCATGACAAAGAGACACTCCTGACAGAATTTTTTTCCGAGCTTCAAGATAGAGAACGAGAGTTTGGCATATCTGACATCCAGCTTGGTCTAACTACTCTTGAAGAAGTTTTCTTGAATATCGCAAAGCAAGCAGAGCTGGAAAGTGCTACCGCTGAAGGGAGCCTAGTGACTTTGACCCTGACATCTGGTGAGTCTGTGGAGATTCCTATAGGAGCAAGGTTTGTGGGAATTCCAGGATCAGAGTGTTCTGAATACCCTACAGGTTTTATGGTAGAAGTATACTGGGTGCAAGATGACACTGGTGCCCTTTGTGTAGCCGGCCACTCGCAGAAAGCTCCTATTCCTCAAAATATCCAACTACCTTCATCTGCAAGACAACGCCGATCAAGGTCAGTTCACGGGGTTGTGATTGATCCAAGTCAAGTTAGTTCAGTCAATTTCCAGTGA 2871 0.419 MKALCLVAQQYKALLKKNVLLSWRSKRATLVQLLSPIIFIFLIFAIDKALKAQTATTSSYKSVTNPSSLPSPPIPPCENKFLVKLPCYDFVWSGDNNPKFHSIVSRIISNNPGRPIPISKVKSFRDKGEVDKWLFDNPMQCPVAIHFLEKNASVISYGIQTNSTSVEKRGRYEDPTFSFQLPLQLAAEREIARFLIGDPSFKWNVSLKEFPHPATSPSSVVGTIGPSFFLAIAMFNFVLQMSSLVTEKELKLRQAMTVMGLYDSAYWLSWLTWETVVTFLSSILILLSGMMFRLDFFLKNSFAVLFFLFFLFQLNMTGLAFMLSAFISKSSSATTVGFSIFIVGFVTQLVALAGIPYTKSISVTFRNVWSLFPPNPFARGLIMLSKAVSEHKGVSWSKRGKCADDDVGCVLTINDIYKWFLATFFLWFVLALYFDNIIPNAMGVRKSVFYFLNPYYWMGKGGQKVKEGGVCSCLISARHEDNSTANDEDVLEEENAVKLQQTQGVVDANLAVQIHGIKKTYPGTCNIGCCCKCKRSAPYHALKGLWVNFTKDQLFCLLGPNGAGKTTAINCLTGITPVTDGDALIYGHSVQSSTGMSNIRKLIGVCPQFDILWDALSGQEHLELFASIKGLSSASIKSITQTSLAEVRLLDAARVRSGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGKLRCIGTSIRLKSRFGTGFIANISFYGNNNENSPVNGDAVSTRRHHEGVKLFFKNRLDVVPKEENNNFLTYVIPHDKETLLTEFFSELQDREREFGISDIQLGLTTLEEVFLNIAKQAELESATAEGSLVTLTLTSGESVEIPIGARFVGIPGSECSEYPTGFMVEVYWVQDDTGALCVAGHSQKAPIPQNIQLPSSARQRRSRSVHGVVIDPSQVSSVNFQ 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02342 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 740 IPR027417 -
Vifa2g02342 956 FunFam ABC transporter A family member 2 502 766 - -
Vifa2g02342 956 Gene3D - 512 756 IPR027417 -
Vifa2g02342 956 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 485 855 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vifa2g02342 956 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 512 758 IPR003439 GO:0005524
Vifa2g02342 956 Pfam ABC-2 family transporter protein 28 433 IPR013525 GO:0016020|GO:0140359
Vifa2g02342 956 Pfam ABC transporter 543 687 IPR003439 GO:0005524
Vifa2g02342 956 SMART AAA_5 551 735 IPR003593 GO:0016887
Vifa2g02342 956 ProSitePatterns ABC transporters family signature. 660 674 IPR017871 GO:0005524|GO:0016887
Vifa2g02342 956 CDD ABC_subfamily_A 512 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02342 Vifa-Chr2 604492838 604497133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02342 555 757 Calmodulin-binding Proteins AT2G36910 23.474 1.17e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02342 - - gmx:100786538 1501.88