Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02337 ATGGCAGAAATGCAAAGTGAGGTAACATGGTTGAACAAGGAAGAGAAGGAAGAAAAAGAAGAAGTAGAAGCTCAAGTTGAAATTTGGAAATACATATTTGGTTTTGTAGAATTATCTGTGGTGAAATGTGCAATTCAACTTGGCATAGCTGATGCAATTGAAAAGCACAAAAAACCCATATCACTATTAGAGTTATCTTCAACTCTAAAATGTGATCCTTCATATCTTAACCGCATCATGAGATTCCTAGTACATAGGAAAATATTCAAAACCATTTCTACCAACCATAACAACTATCTTAGTTATGTTCAAACACCACTTTCTCGTCGTTTGATTCAAAATGGCGAACATAGCATGGCTGCTTTTCTTTTACTAGAAAGCAGTCCTGTTATGGTAGCTCCTTGGCTCAATCTAAGTGATCGTGTTCTGATAAATGGAAACCCTTCTTTTAAGAAAGTTCATGGTGAAGATGTTTGGCGCTATGCAGCTTCAAATCTTAATCATAGTAATCTTATCAATAATGCTATGGCTTGTGATACTAGAGCTGTTGTGCCGGTTATTATTGAAGGTTGTAGTGAGTTGTTTGATGGTGTTAAATCCATGGTGGATGTTGGTGGTGGAAATGGTACCACCTTGAACATCCTTGTTAAGGCTTTTTCTTGGATTCAAGGTATTAATTTTGATCTTGCTCATGTTATTGATGTGGCTCCAAAGTGTGATGGTGTGGAACATGTGGCTGGTGATATGTTTACAAGTGTTCCTAAAGCCGAGATTGTATTTCTTAAGTGGGTTTTGCATGATTGGGGGGATGAAGAGTGCATCAAAATCTTAAAGAATTGTAGGGAAGCTATACCAAAAGAAAATGGAAAAGTGATTATTGTGGAAGCAGTTATTGAAAAAGAAGGAGGAGAAAAACACAACAAGTATGAAGACGTAGGGTTAATGTTAGACATGGTGATGATGGCACACACAAACGTTGGCAAAGAAAGAACACTACAAGAGTGGGAGCATGTCATCAAAATGGCTGGATTCAATACAATCACTGTGAAATCTATCAATGCCGTACAGTCTGTAATTGTGGCATCAGATTAA 1092 0.3718 MAEMQSEVTWLNKEEKEEKEEVEAQVEIWKYIFGFVELSVVKCAIQLGIADAIEKHKKPISLLELSSTLKCDPSYLNRIMRFLVHRKIFKTISTNHNNYLSYVQTPLSRRLIQNGEHSMAAFLLLESSPVMVAPWLNLSDRVLINGNPSFKKVHGEDVWRYAASNLNHSNLINNAMACDTRAVVPVIIEGCSELFDGVKSMVDVGGGNGTTLNILVKAFSWIQGINFDLAHVIDVAPKCDGVEHVAGDMFTSVPKAEIVFLKWVLHDWGDEECIKILKNCREAIPKENGKVIIVEAVIEKEGGEKHNKYEDVGLMLDMVMMAHTNVGKERTLQEWEHVIKMAGFNTITVKSINAVQSVIVASD 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02337 363 PANTHER O-METHYLTRANSFERASE 38 344 IPR016461 GO:0008168
Vifa2g02337 363 Coils Coil 1 21 - -
Vifa2g02337 363 Gene3D - 11 111 IPR036388 -
Vifa2g02337 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 363 IPR016461 GO:0008168
Vifa2g02337 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 360 IPR029063 -
Vifa2g02337 363 SUPERFAMILY "Winged helix" DNA-binding domain 18 115 IPR036390 -
Vifa2g02337 363 FunFam O-methyltransferase family protein 113 362 - -
Vifa2g02337 363 FunFam O-methyltransferase family protein 12 111 - -
Vifa2g02337 363 PIRSF O-mtase 5 362 IPR016461 GO:0008168
Vifa2g02337 363 Gene3D Vaccinia Virus protein VP39 113 361 IPR029063 -
Vifa2g02337 363 Pfam Dimerisation domain 40 84 IPR012967 GO:0046983
Vifa2g02337 363 Pfam O-methyltransferase domain 135 345 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02337 Vifa-Chr2 603959372 603962345 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02337 40 349 Monolignol Biosynthesis Gene Families AT5G54160 36.646 1.06e-63 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02337 K22588 - gmx:100782951 470.7