Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02336 ATGGAGTTTTGGGGTGCCGAGGTTAAGGTTGGCAAATCTCTCAAGGTTGACCCACAACAATCTGAAGCTTGCATTCACCTTTCTCAGGCTGCACTTGGTGAAACTAAGAAAGACAAAGCTAATGAGCCTATTTCTCTTTACTTGAAAGTTGGTGACCAGAAGTTTGTTTTCGGAACCCTTAACAGAGAGAAAATTCCTCAGACAACTCTTGATTTGGTTCTGGACAAGGAATTTGAGCTTTCTCACAGTTCCAAAACGTCTAGTGTCCATTTCCGTGGATACAAATCTTACTACCCTTATGATGATGTTGAGGGAGATGATTATTCTGATAGTGATGAGGAGGAAATTCCTTTGGCTCAACCCATAGAAAATGGGAAAACAGAAACAAAGGCTGAGGACCAGAAAGTTTCTGAAGCTAAGAAAGCTACTGCCAAGAGTGGTACACCTGCCAAGGCTGATCCACCTGCTAAGAGTGGTCCATCCGGAAAACAAGTGAAAGTTGTTGATCCAAAGGAGGAAAATGATGATGATTCTGATGATGAGTCTGATGATGATCTTGATAGCTCTGATGAAGAGATGGACGATGTTGATAGTGAAGATGAGGATGAGAGTGATGAAGAAGATGAAGAGACTCCTGTGAAGAAGGTGGACCAGGGGAAGAAGAGGGCTAATGAATCTGCATTTAAAACCCCTGTTCCTTCCAAGAAGTCAAAAAATGCCACTCCTGAGAAAACTGATGGACATCTCTCTTGCGGTAACTGCAGCAAGACATTCACCTCTGACAGTGCACTTAGTCAGCATAGAGGCCAAAACCTCAATGGGGCGCCGCTGCTGATTTAA 840 0.4345 MEFWGAEVKVGKSLKVDPQQSEACIHLSQAALGETKKDKANEPISLYLKVGDQKFVFGTLNREKIPQTTLDLVLDKEFELSHSSKTSSVHFRGYKSYYPYDDVEGDDYSDSDEEEIPLAQPIENGKTETKAEDQKVSEAKKATAKSGTPAKADPPAKSGPSGKQVKVVDPKEENDDDSDDESDDDLDSSDEEMDDVDSEDEDESDEEDEETPVKKVDQGKKRANESAFKTPVPSKKSKNATPEKTDGHLSCGNCSKTFTSDSALSQHRGQNLNGAPLLI 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02336 279 MobiDBLite consensus disorder prediction 230 272 - -
Vifa2g02336 279 MobiDBLite consensus disorder prediction 103 279 - -
Vifa2g02336 279 MobiDBLite consensus disorder prediction 126 140 - -
Vifa2g02336 279 Gene3D Nucleoplasmin core domain 1 99 - -
Vifa2g02336 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 276 IPR013087 -
Vifa2g02336 279 MobiDBLite consensus disorder prediction 103 117 - -
Vifa2g02336 279 MobiDBLite consensus disorder prediction 173 210 - -
Vifa2g02336 279 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Vifa2g02336 279 FunFam Histone deacetylase HDT1 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02336 Vifa-Chr2 603745231 603746512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02336 1 117 C2H2 Transcription Factor Family AT3G44750 51.282 8.02e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g02336 NPL 5.6e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02336 - - gmx:100792094 263.462