Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02334 ATGGGAGAAATACAGAGTGAGTTAACATGGGAGAAGATGAAAGAGGAGGAAGAAAAAGAAGAAATAGAAGCTCAAGTTGAAATTTGGAAATACATATTTGGTTTTGTTGAACTATCTGTGATCAAATGTGCAATTCAACTTGGCATAGCTGATGCAATTGAAAATCACAAAAAACCCATATCACTATTAGAGTTATCTTCAACTCTAAAATGTGACTCTTCATATCTTAACCGCATCATGAGATTCCTAGTACATAGGAAAATATTCAAAACCATTTCTACCAACTATGACAACTATCCTAGTTATGTTCAAACCCCACTTTCTCGTCGTTTGATTCGAAACGGCGAGCAGAGCATGACTGCTTTTCTTTTATTAGAGAGCAGTCATGTTATGGTAGCTCCTTGGCTTAGTCTAAGTGATCGTATTTTGGTAAATGGAAACCCTTCTTTTAAGAAGGTTCATGGTGAAGATATTTGGCGCTATGCTGCTTCAAATCTTGATCACAGTAATCTTATCAACGATGCTATGGCTTGTGATGCTAAAGTTGTTGTGCCTGCTATTGTTGAAGGTTGTAGTGAGTTGTTTGATGGTGTTGGATCATTGGTGGATGTTGGTGGTGGGAATGGTACCACCTTGAGCATCCTTGTTAAGGCTTTTCCTTGGATTCAAGGAACCAACTTTGATCTTCCACATGTCATTGATGTGGCTCTAAAGTATGATGGGATACAACACGTGGTAGGTGACATGTTTACAAGTATTTCCAAAGCTGATGCTATATTTTTTAAGTGTATGCAGTGGGTTTTGCATGATTGGGGGGATGAAGAGTGCATCAAAATTTTAAAGAATTGTAAGGAAGCTATACCAAAAGAAAATGGAAAAGTGATTATTGTTGACGTAGTTATTGAAGAAGAAAGAGAAAAACACAACAAATATGAAGACGTAAGGTTAATGTTAGACATGGTGATGATGGCACATACTAACATTGGTAAAGAAAGAACACTAAAAGAGTGGGAGCATGTCATCAAAATGGCTGGATTCAATACAATCACTGTGAAATCTATCAATGCCGTACAATCTGTAATTGTCGCCTCATGCTGA 1098 0.3725 MGEIQSELTWEKMKEEEEKEEIEAQVEIWKYIFGFVELSVIKCAIQLGIADAIENHKKPISLLELSSTLKCDSSYLNRIMRFLVHRKIFKTISTNYDNYPSYVQTPLSRRLIRNGEQSMTAFLLLESSHVMVAPWLSLSDRILVNGNPSFKKVHGEDIWRYAASNLDHSNLINDAMACDAKVVVPAIVEGCSELFDGVGSLVDVGGGNGTTLSILVKAFPWIQGTNFDLPHVIDVALKYDGIQHVVGDMFTSISKADAIFFKCMQWVLHDWGDEECIKILKNCKEAIPKENGKVIIVDVVIEEEREKHNKYEDVRLMLDMVMMAHTNIGKERTLKEWEHVIKMAGFNTITVKSINAVQSVIVASC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02334 365 Gene3D Vaccinia Virus protein VP39 112 363 IPR029063 -
Vifa2g02334 365 SUPERFAMILY "Winged helix" DNA-binding domain 18 115 IPR036390 -
Vifa2g02334 365 Coils Coil 5 25 - -
Vifa2g02334 365 Pfam O-methyltransferase domain 135 347 IPR001077 GO:0008171
Vifa2g02334 365 Pfam Dimerisation domain 40 84 IPR012967 GO:0046983
Vifa2g02334 365 CDD AdoMet_MTases 201 301 - -
Vifa2g02334 365 Gene3D - 10 111 IPR036388 -
Vifa2g02334 365 PIRSF O-mtase 6 365 IPR016461 GO:0008168
Vifa2g02334 365 FunFam O-methyltransferase family protein 12 111 - -
Vifa2g02334 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 362 IPR029063 -
Vifa2g02334 365 FunFam O-methyltransferase family protein 113 364 - -
Vifa2g02334 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 365 IPR016461 GO:0008168
Vifa2g02334 365 PANTHER O-METHYLTRANSFERASE 24 346 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02334 Vifa-Chr2 603117161 603118394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02334 40 351 Monolignol Biosynthesis Gene Families AT5G54160 35.625 4.44e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02334 K22588 - gmx:100782951 449.129