Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02326 ATGATCAGAACCAATAGTAATTATCTTAGAGAGATTCAGTTAAAAATGGCAGAAATGCAAAGTGAGATAACATGGTTGAACAAGGAAGAGAAGGAAGAAAAAGAAGAAGCAGAAGCTCAAGTTGAAATTTGGAAATACATATTTGGTTTTGTAGAACTATCTGTGGTGAAATGTGCAATCCAACTTGGCATAGCTGATGCAATTGAAAAGTACAAAAAACCCATATCACTATTAGAGTTATCATCAACTCTAAAATGTGACCCTTCATATCTTAACCGCATCATGAGATTCCTAGTACATAGGAAAATATTCAAAACCATTTCTACCAACCACGACAACTATCCTAGTTATGTTCAAACCCCACTTTCTCGCCGTTTGATTCGAAACGGCGAAGATAGCATGGCTGCTCTTCTTTTATTACAAAGCAGTCCTGTAATAGTAATTCCTTGGCTCAGTCTAAGTGACCGTGTTCTAGCAAATGGAAATCCATCTTTTCAAAAGGTTCATGGAGAAGATCTTTGGGGCTATGCTGCTTCAAATCGTGATTACAGTAATCTTTTTAATGATGCTATGGCTTGTGATGCTAAAGTTGTTGTGCCTGCTATTATTGAAGGAATCAACTTTGATCTTGCACATGTCATTGATGTGGCTCCAAAATATGATGGGATACAACATGTGGCAGGTGACATGTTTACAAGTGTTCCCAAAGCTGATGCTGTATTTCTTAAGTGTATGCAGTGGGTTTTGCATGATTGGGGGGATGAAGAGTGCATCAAAATTTTAAAGAATTGTAAGGAAGCTATACCAAAAGAAAATGGAAAAGTGATTATTGTTGACGTAGTTATTGAAGAAGGAGGAGGAAAACACAACAAGTATGAAGACGTAGGGTTAATGTTAGACATGGTGATGATGGCACATACGAACATTGGTAAAGAAAGAACACTAAAAGAGTGGGAGCATGTGATCCATATGGCTGGATTCAATACAATCACTGTGAAATCTATCAATGCCGTACAATCTGTAATTGTCGCCTCGTGCTAA 1041 0.3746 MIRTNSNYLREIQLKMAEMQSEITWLNKEEKEEKEEAEAQVEIWKYIFGFVELSVVKCAIQLGIADAIEKYKKPISLLELSSTLKCDPSYLNRIMRFLVHRKIFKTISTNHDNYPSYVQTPLSRRLIRNGEDSMAALLLLQSSPVIVIPWLSLSDRVLANGNPSFQKVHGEDLWGYAASNRDYSNLFNDAMACDAKVVVPAIIEGINFDLAHVIDVAPKYDGIQHVAGDMFTSVPKADAVFLKCMQWVLHDWGDEECIKILKNCKEAIPKENGKVIIVDVVIEEGGGKHNKYEDVGLMLDMVMMAHTNIGKERTLKEWEHVIHMAGFNTITVKSINAVQSVIVASC 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02326 346 Gene3D - 26 126 IPR036388 -
Vifa2g02326 346 PANTHER O-METHYLTRANSFERASE 43 204 IPR016461 GO:0008168
Vifa2g02326 346 Gene3D Vaccinia Virus protein VP39 128 203 IPR029063 -
Vifa2g02326 346 Gene3D Vaccinia Virus protein VP39 204 345 IPR029063 -
Vifa2g02326 346 Pfam O-methyltransferase domain 203 328 IPR001077 GO:0008171
Vifa2g02326 346 Coils Coil 9 47 - -
Vifa2g02326 346 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 343 IPR029063 -
Vifa2g02326 346 PIRSF O-mtase 20 205 IPR016461 GO:0008168
Vifa2g02326 346 PIRSF O-mtase 200 346 IPR016461 GO:0008168
Vifa2g02326 346 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 44 346 IPR016461 GO:0008168
Vifa2g02326 346 FunFam O-methyltransferase family protein 27 126 - -
Vifa2g02326 346 SUPERFAMILY "Winged helix" DNA-binding domain 33 130 IPR036390 -
Vifa2g02326 346 Pfam Dimerisation domain 55 99 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02326 Vifa-Chr2 600514477 600515754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02326 56 332 Monolignol Biosynthesis Gene Families AT5G54160 33.750 9.80e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02326 K22588 - gmx:100782951 390.193