Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02325 ATGATCAGAACCAATAGTAATTATCTTAGAGAGATTCAGTTAAAAATGGCAGAAATGCAAAGTGAGATAACATGGTTGAACAAGGAAGAGAAGGAAGAAAAAGAAGAAGCAGAAGCTCAAGTTGAAATTTGGAAATACATATTTGGTTTTGTAGAACTATCTGTGGTGAAATGTGCAATCCAACTTGGCATAGCTGATGCAATTGAAAAGTACAAAAAACCCATATCACTATTAGAGTTATCATCAACTCTAAAATGTGACCCTTCATATCTTAACCGCATCATGAGATTCCTAGTACATAGGAAAATATTCAAAACCATTTCTACCAACCACGACAACTATCCTAGTTATGTTCAAACCCCACTTTCTCGCCGTTTGATTCGAAACGGCGAAGATAGCATGGCTGCTCTTCTTTTATTACAAAGCAGTCCTGTAATAGTAATTCCTTGGCTCAGTCTAAGTGACCGTGTTCTAGCAAATGGAAATCCATCTTTTCAAAAGGTTCATGGAGAAGATCTTTGGGGCTATGCTGCTTCAAATCGTGATTACAGTAATCTTTTTAATGATGCTATGGCTTGTGATGCTAAAGTTGTTGTGCCTGCTATTATTGAAGGAATCAACTTTGATCTTGCACATGTCATTGATGTGGCTCCAAAATATGATGGGATACAACATGTGGCAGGTGACATGTTTACAAGTGTTCCCAAAGCTGATGCTGTATTTCTTAAGTGGGTTTTGCATGATTGGGGGGATGAAGAGTGCATCAAAATTTTAAAGAATTGTAAGGAAGCTATACCAAAAGAAAATGGAAAAGTGATTATTGTTGACGTAGTTATTGAAGAAGGAGGAGGAAAACACAACAAGTATGAAGACGTAGGGTTAATGTTAGACATGGTGATGATGGCACATACGAACATTGGTAAAGAAAGAACACTAAAAGAGTGGGAGCATGTGATCCATATGGCTGGATTCAATACAATCACTGTGAAATCTATCAATGCCGTACAATCTGTAATTGTCGCCTCGTGCTAA 1032 0.374 MIRTNSNYLREIQLKMAEMQSEITWLNKEEKEEKEEAEAQVEIWKYIFGFVELSVVKCAIQLGIADAIEKYKKPISLLELSSTLKCDPSYLNRIMRFLVHRKIFKTISTNHDNYPSYVQTPLSRRLIRNGEDSMAALLLLQSSPVIVIPWLSLSDRVLANGNPSFQKVHGEDLWGYAASNRDYSNLFNDAMACDAKVVVPAIIEGINFDLAHVIDVAPKYDGIQHVAGDMFTSVPKADAVFLKWVLHDWGDEECIKILKNCKEAIPKENGKVIIVDVVIEEGGGKHNKYEDVGLMLDMVMMAHTNIGKERTLKEWEHVIHMAGFNTITVKSINAVQSVIVASC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02325 343 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 340 IPR029063 -
Vifa2g02325 343 PANTHER O-METHYLTRANSFERASE 43 204 IPR016461 GO:0008168
Vifa2g02325 343 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 44 343 IPR016461 GO:0008168
Vifa2g02325 343 FunFam O-methyltransferase family protein 27 126 - -
Vifa2g02325 343 Coils Coil 9 47 - -
Vifa2g02325 343 Pfam O-methyltransferase domain 203 325 IPR001077 GO:0008171
Vifa2g02325 343 Pfam Dimerisation domain 55 99 IPR012967 GO:0046983
Vifa2g02325 343 PIRSF O-mtase 200 343 IPR016461 GO:0008168
Vifa2g02325 343 PIRSF O-mtase 20 204 IPR016461 GO:0008168
Vifa2g02325 343 Gene3D - 26 126 IPR036388 -
Vifa2g02325 343 Gene3D Vaccinia Virus protein VP39 128 203 IPR029063 -
Vifa2g02325 343 Gene3D Vaccinia Virus protein VP39 204 342 IPR029063 -
Vifa2g02325 343 SUPERFAMILY "Winged helix" DNA-binding domain 33 130 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02325 Vifa-Chr2 600514477 600515754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02325 56 329 Monolignol Biosynthesis Gene Families AT5G54160 34.069 7.56e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02325 K22588 - gmx:100782951 395.201