Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02323 ATGGAAAGTGAGGTAACATGGTTGAACAAGGAAGAGAAGGAAGAAAAAGAAGAAGCAGAAGCTCAAGTTGAAATTTGGAAATACATATTTGGTTTTGTAGAACTATCTGTGGTGAAATGTGCAATCCAACTTGGCATAGCTGATGCAATTGAAAAGTACAAAAAACCCATATCACTATTAGAGTTATCATCAACTCTAAAATGTGACCCTTCATATCTTAACCGCATCATGAGATTCCTAGTACATAGGAAAATATTCAAAACCATTTCTACCAACCATGACAACTATCCTAGTTATGTTCAAACCCCACTTTCTCGTCGTTTGATTCAAAACGGCGAGCAAAGCATGACTGCTTTTCTTTTATTAGAGAGCAGTCATGTTATGGTAGCTCCTTGGCTCAGTATAAGTGATCGTGTTCTGGTAAATGGAAATCCATCTTTTCAAAAGGTTCATGGAGAAGATCTATGGGGCTATACAGCTAAGAATCTTGATCATAGTAATCTTTTTAATGATGCTATGGCTTGTGATGCTAAAGTTATTGTGCCTGCTATTATTGAAGGTTATAGTGAGTTGTTTGATGGTGTTAAATCCATGGTGGATGTTGGTGGTGGGAATGGTACCACCTTGAGCATCCTTGTTAAGACTTTTCCTTGGATTCAAGGAATCAACTTTGATCTTGCACATGTCATTGATGTGGCTCCAAAATATGATGGGATACAACATATGGCAGGTGACATGTTTACAAGTGTTCCCAAAGCTGATGCTGTATTTCTTAAGTGGGTTTTGCATGATTGGGGAGATGAAGAGTGCATCAAAATCTTAAAGAATTGTAAGGAAGCTATACCAAAAGAAAATGGAAAAGTGATTATTGTTGACGTAGTTATTGAAGAAGGAGGAGGAAAACACAACAAGTATGAAGACGTAGGGTTAATGTTAGACATGGTGATGATGGCACATACGAACATTGGTAAAGAAAGAACACTAAAAGAGTGGGAGCATGTGATCCATATGGCTGGATTCAATACAATCACTGTGAAATCTATCAATGCCGTACAATCTGTAATTGTCGCCTCGTGCTAA 1080 0.3769 MESEVTWLNKEEKEEKEEAEAQVEIWKYIFGFVELSVVKCAIQLGIADAIEKYKKPISLLELSSTLKCDPSYLNRIMRFLVHRKIFKTISTNHDNYPSYVQTPLSRRLIQNGEQSMTAFLLLESSHVMVAPWLSISDRVLVNGNPSFQKVHGEDLWGYTAKNLDHSNLFNDAMACDAKVIVPAIIEGYSELFDGVKSMVDVGGGNGTTLSILVKTFPWIQGINFDLAHVIDVAPKYDGIQHMAGDMFTSVPKADAVFLKWVLHDWGDEECIKILKNCKEAIPKENGKVIIVDVVIEEGGGKHNKYEDVGLMLDMVMMAHTNIGKERTLKEWEHVIHMAGFNTITVKSINAVQSVIVASC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02323 359 Gene3D Vaccinia Virus protein VP39 109 357 IPR029063 -
Vifa2g02323 359 PANTHER O-METHYLTRANSFERASE 35 340 IPR016461 GO:0008168
Vifa2g02323 359 Pfam Dimerisation domain 37 81 IPR012967 GO:0046983
Vifa2g02323 359 PIRSF O-mtase 3 359 IPR016461 GO:0008168
Vifa2g02323 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 356 IPR029063 -
Vifa2g02323 359 Coils Coil 9 29 - -
Vifa2g02323 359 Gene3D - 8 108 IPR036388 -
Vifa2g02323 359 FunFam O-methyltransferase family protein 9 108 - -
Vifa2g02323 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 359 IPR016461 GO:0008168
Vifa2g02323 359 Pfam O-methyltransferase domain 132 341 IPR001077 GO:0008171
Vifa2g02323 359 SUPERFAMILY "Winged helix" DNA-binding domain 15 112 IPR036390 -
Vifa2g02323 359 FunFam O-methyltransferase family protein 110 358 - -
Vifa2g02323 359 CDD AdoMet_MTases 199 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02323 Vifa-Chr2 600479756 600480982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02323 37 345 Monolignol Biosynthesis Gene Families AT5G54160 36.792 2.69e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02323 K22588 - gmx:100782951 449.129