Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02316 ATGAGAGGAAGAAGCTACAGTCCATCGCCTCCACCACGTTACAGCAGAAGAGGAGGCGGAGGAGGAGGAAGAAGTCCAAGTCCCCGTCGCCGTTACGCCCCCCGTGAAAGTGATCTACCTACCAGTCTTCTTGTTCGTAACCTTCGCCATGACTGTAGGCCTGAAGATCTTCGTAGACCTTTTGGTCAATTCGGTCCCCTCAAAGACATTTATCTCCCTAAAGATTATTACACTGGACAGCCCCGTGGTTTTGGTTTTATCCAATTTGTGGATCCTGCTGATGCTGCTGATGCTAAATATCATATGGATGGTCAAGTGCTTCTTGGGAGAGAGCTGACTGTTGTTTTTGCTGAGGAGAATCGAAAGAAGCCAACTGAGATGAGGGTCAGAGAGAGAAGTGGACGGTATTCTGATCGAAGGAGGACTCCCCCACGTTATTCTCGTTCACCCCGCTATTCCCGGTCTCCACCTCGTCATAGAACTCACTCTCGCAGTCGTGACTATGATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGATCTCTATCACCCGAGGATAGAAGGCACAGTAGAGAAAGATCACACCCCAGCAGAGAGAGGTCATACTCACGCTCTCCACCACCCAACAATGGGGATGCAAGAAGCCGCAGTCCGAGTCCTGAGAAAGGCCCAGTCCTGAGCAGAAGTCCAAGTCCAAACCGTGATGCCAGGGAACCAGCTCGCAGCAGGTCCCCCAGTCAGTGA 744 0.5134 MRGRSYSPSPPPRYSRRGGGGGGRSPSPRRRYAPRESDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRVRERSGRYSDRRRTPPRYSRSPRYSRSPPRHRTHSRSRDYDSPPPKRREYSRSLSPEDRRHSRERSHPSRERSYSRSPPPNNGDARSRSPSPEKGPVLSRSPSPNRDAREPARSRSPSQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02316 247 Gene3D - 3 133 IPR012677 -
Vifa2g02316 247 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 40 234 - -
Vifa2g02316 247 SMART rrm1_1 42 115 IPR000504 GO:0003723
Vifa2g02316 247 MobiDBLite consensus disorder prediction 121 145 - -
Vifa2g02316 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 112 IPR000504 GO:0003723
Vifa2g02316 247 MobiDBLite consensus disorder prediction 201 226 - -
Vifa2g02316 247 MobiDBLite consensus disorder prediction 121 247 - -
Vifa2g02316 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Vifa2g02316 247 MobiDBLite consensus disorder prediction 162 200 - -
Vifa2g02316 247 SUPERFAMILY RNA-binding domain, RBD 40 146 IPR035979 GO:0003676
Vifa2g02316 247 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02316 Vifa-Chr2 598643962 598646028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02316 41 130 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 1.30e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02316 K12900 - gmx:100775883 286.96